Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq8 165 2e-35 seq6 156 1e-32 seq1 95.1 3e-14 >seq8 Length=506948 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||| ||||||| ||||| |||| | |||||| || ||||| | || Sbjct 221945 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACCGTCTTCCAATTG 221886 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| | ||||||||||| || |||||||||||||||||||||||||| Sbjct 221885 CTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTT 221826 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || |||||||| || | ||| || || | || || ||||| || || Sbjct 221825 GGACTTGACGTTGTCAATGGTGTCAGAAGATTCGACTTCAAGAGTAATAGTCTTACCAGT 221766 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | |||||| Sbjct 221765 CAAAGTCTTGACGAAAATTTGCAT 221742 Score = 159 bits (176), Expect = 8e-34 Identities = 162/210 (77%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||| ||||||| ||||| |||| | |||||| || ||||| | || Sbjct 221717 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACCGTCTTCCAATTG 221658 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| | ||||||||||| || |||||||||||||| ||||||||||| Sbjct 221657 CTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTT 221598 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || || ||||| || | ||| || || || || || ||||| || || Sbjct 221597 GGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCGGT 221538 Query 225690 CAAAGTTTTTATGAACACTTGCAT-TTTAT 225718 ||| || || | ||| | |||||| ||||| Sbjct 221537 CAATGTCTTAACGAAGATTTGCATGTTTAT 221508 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||||||||| ||||||| ||||| || | | |||||| || Sbjct 222641 TCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 222582 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || ||||||||| || |||||||||||||| Sbjct 222581 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTT 222522 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || || || ||||| |||| || || || | ||||| Sbjct 222521 GTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCAACTTCGAGGGTGAT 222462 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 222461 AGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 222426 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||| ||||||| ||||| || | || ||||| || ||||| | || Sbjct 222173 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCCGTCTTCCAATTG 222114 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | || ||||||||| || |||||||||||||||||||||||||| Sbjct 222113 CTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTT 222054 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || |||||||| || | ||| || || | || || ||||| || || Sbjct 222053 GGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCAAGAGTAATAGTCTTACCAGT 221994 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | |||||| Sbjct 221993 CAAAGTCTTGACGAAAATTTGCAT 221970 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||| ||||||| ||||| || | || ||||| || ||||||| || Sbjct 222401 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCCGTCTTCTAATTG 222342 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||| || | || ||||||||| || |||||||||||||||||||||||||| Sbjct 222341 CTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTT 222282 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || || ||||| |||| || || || | || || ||||| || || Sbjct 222281 GGACTTAACGTTGTCAATAGTGTCAGAGGACTCGACTTCAAGAGTAATAGTCTTACCAGT 222222 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||| || || | ||| | |||||| Sbjct 222221 CAAGGTCTTGACGAAAATTTGCAT 222198 >seq6 Length=1682205 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | |||||||| || |||| ||||| || | | |||||| || Sbjct 47331 TCTTAAGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 47272 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | |||||| ||||||||||| | || ||||||||| || |||||||||||||| Sbjct 47271 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 47212 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || ||||| ||| ||| || |||||||| |||| || || || || || || Sbjct 47211 GTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 47152 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | ||||||||| Sbjct 47151 GGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 47113 >seq1 Length=3488706 Score = 95.1 bits (104), Expect = 3e-14 Identities = 182/266 (68%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 |||||||||||||||||| | || | ||| ||||||| | || | || ||| Sbjct 837 TTATATTTAATATTTGGTATGATATCAGCTATGGTAGGTACAGGTATGTCAGTTATAATA 778 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 || | |||||||| | | |||| | || ||| |||| |||| | ||| Sbjct 777 AGAATGGAATTAGCGACAGGAAATAGTCAATTCTTCCATGGAAATAACCAAGCATTTAAC 718 Query 7564 GTTATTATTA-CGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 || |||| || | | ||||| || | |||||||||||| ||||||||||| || | || Sbjct 717 GT-ATTAGTAACAGGTCATGCATTAGCTATGATTTTCTTATTTGTTATGCCAGTATTAAT 659 Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682 || | ||| || |||| || || || | |||||||| | |||||||| ||| | Sbjct 658 TGGTGCTTTTGGTAATTTCTTAGTACCAGTTATGATTGGAGGAGTAGATATGGCATTTGC 599 Query 7683 AAGGCTTAACAATATAAGTTTTTGAT 7708 || | || ||||| |||||||||| Sbjct 598 TAGATTAAATAATATTAGTTTTTGAT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531047206940