Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq8 114 3e-20 seq6 91.5 3e-13 >seq8 Length=506948 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||||||||| |||| | |||||| || ||||| | Sbjct 221948 CAAG-TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACCGTCTTCCA 221890 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | || ||||| | | || |||||||| ||||| | Sbjct 221889 ATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGA 221830 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | |||| ||| || ||||||||||||||||| || | Sbjct 221829 TCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCGACTTCAAGAGTAATAGTCTTAC 221770 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||| | ||||| Sbjct 221769 CAGTCAAAGTCTTGACGAAAATTTGCAT 221742 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||||||||| || | ||| ||||| || ||||| | Sbjct 222176 CAAG-TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCCGTCTTCCA 222118 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | || || ||||| | | || |||||||| ||||| | Sbjct 222117 ATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGA 222058 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | |||| ||| || ||||||||||||||||| || | Sbjct 222057 TCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCAAGAGTAATAGTCTTAC 221998 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||| | ||||| Sbjct 221997 CAGTCAAAGTCTTGACGAAAATTTGCAT 221970 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||||||||| || | ||| ||||| || ||||||| Sbjct 222404 CAAG-TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCCGTCTTCTA 222346 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || |||||||| || | || || ||||| | | || |||||||| ||||| | Sbjct 222345 ATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGA 222286 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | |||| || ||| ||||||||||||||||| || | Sbjct 222285 TCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCGACTTCAAGAGTAATAGTCTTAC 222226 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||| | ||||| Sbjct 222225 CAGTCAAGGTCTTGACGAAAATTTGCAT 222198 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||||||||| |||| | |||||| || ||||| | Sbjct 221720 CAAG-TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACCGTCTTCCA 221662 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | || ||||| | | || |||||||| ||||| | Sbjct 221661 ATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGGA 221602 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| ||| || ||||| | ||||| || || | Sbjct 221601 TCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTAC 221542 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | ||||| ||||||| ||||| || Sbjct 221541 CGGTCAATGTCTTAACGAAGATTTGCATGTT 221511 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||||||||| || | | |||||| || ||||| | Sbjct 222632 CAAG-TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCA 222574 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | || || ||||| | | || |||||||| ||||| | Sbjct 222573 ATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGA 222514 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | |||| || ||| ||||| || || ||||| || | Sbjct 222513 TCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCAACTTCGAGGGTGATAGTCTTAC 222454 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||| | ||||| Sbjct 222453 CGGTCAAAGTCTTGACGAAAATTTGCAT 222426 >seq6 Length=1682205 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || || ||||||||||| || | | |||||| || ||||| | || || Sbjct 47312 GTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAACTGCTTACCA 47253 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | || || ||||| | | || |||||||| || ||||| || ||| Sbjct 47252 GCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGAATCTTGGACTTG 47193 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | |||| || ||| ||||| | ||||| || || || || | |||| Sbjct 47192 ACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTC 47133 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | |||||||| Sbjct 47132 TTGACGAAAATTTGCATTTT 47113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820652166710