Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 172 6e-38 >seq4 Length=2182181 Score = 172 bits (190), Expect = 6e-38 Identities = 503/773 (65%), Gaps = 9/773 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||| || || ||||| | ||||| || | |||| || | |||| |||||| Sbjct 397347 GAGAACAAGCGTCGTTTCGTTCTCTTCCCAATCAAGTACCACGAAGTCTGGCAAATGTAC 397406 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||| || || || |||||||| | || || | ||| || ||||| || | Sbjct 397407 AAGAAGGCTGAAGCTTCCTTCTGGACTGCTGAAGAAATCGACTTGAGTAAGGATACCACT 397466 Query 116711 GACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| | | | || ||| | ||||| | | ||||| | | |||| || Sbjct 397467 GACTGGAACCACAAGTTAAACAAGAACGAAAGATACTTCATTTCCCGTATCTTGGCTTTC 397526 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||||||| ||||| |||||||||||||| |||||||| ||| || || || Sbjct 397527 TTCGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGTCGAGAACTTCTCTGCCGAAGTC 397586 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || | | || || ||| |||||||| || || ||| ||||| ||| | ||||| Sbjct 397587 CAAATCCCAGAAGCCAAGTGTTTCTACGGTTTCCAAATCATGATGGAAAACATTCACTCC 397646 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || | || || | || ||||| ||||| | | || ||| | | ||| Sbjct 397647 GAGACTTACTCTTTGTTAATTGACACTTACGTTAAGGACCCTAAGGAAGCTGACTTCC-- 397704 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 | || |||||||| || | || || ||| ||| | ||||||| || ||||| || | Sbjct 397705 -TTTTCAACGCCATTGACAACATTCCATGCATCAGAAAGAAGGCTGATTGGGCTTTGAGA 397763 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||||| | | |||||| ||||| || | | || || || || ||||| || Sbjct 397764 TGGATCTCTGATGATGAGGCCTTGTTCGGTGAAAGATTAGTTGCTTTTGCTGCCGTTGAA 397823 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || | ||||| || |||||| |||| || ||| | ||||| | || | ||| Sbjct 397824 GGTATTTTCTTCAGTGGTTCTTTCGCTTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATG 397883 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || |||||||| |||||| | |||| ||| || || ||| |||| ||||| Sbjct 397884 CCAGGTTTGACTTTCTCTAACGAGTTGATCTGCAGAGATGAAGGTTTGCACACTGACTTC 397943 Query 117185 GCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244 ||||||||| | ||| || ||| | |||| | | | || | ||||| Sbjct 397944 GCCTGTTTGTTATTCTCCCACTTGCAAAACAGACCAGACCCAGTTATTGTTGAGAAGATC 398003 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 |||| || || ||| || ||||| ||| ||||||| || |||| || || Sbjct 398004 ATCACTGAGGCCGTCAAGATTGAGCAAGAATTCTTCACCGACGCTTTGCCAGTCTCCTTG 398063 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAG 117357 |||| | || ||| ||||| |||||| |||| ||||| |||||||| Sbjct 398064 TTGGGTATGAACGCCGAGTTGATGTGCCAATACGTCGAATTCGTTGCCGACAG 398116 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || || || ||||| ||| | || ||||| || Sbjct 2129009 AAAATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCC 2128950 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| || || || || | ||| Sbjct 2128949 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGAC 2128890 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| || | |||| ||| || || ||| |||| |||| | ||||| |||||| Sbjct 2128889 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTAC 2128830 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||||||||||||| |||| |||| | || || | ||||| || || || Sbjct 2128829 AACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGGTGG 2128777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219116276880