Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2 109 4e-19 seq4 82.4 6e-11 >seq2 Length=2390349 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||||||||||||||||||||| | | ||| ||| |||||| Sbjct 2170392 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCC 2170451 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || | || | ||||||||| || || | |||||||| || Sbjct 2170452 AATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 2170511 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| || |||| ||||| ||||| | || Sbjct 2170512 ATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTA 2170571 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || ||||| || || || ||||||||| Sbjct 2170572 CCTGTTAATGTCTTAACGAAGATTTGCATT 2170601 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||| | | ||| | | ||||||| Sbjct 2169411 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCTTCC 2169470 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || |||| | ||||||||| || || | |||||||| || Sbjct 2169471 AATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 2169530 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | ||||||| || ||| ||||| ||||| | || Sbjct 2169531 ATCTTGGACTTAACGTTGTCGATAGTGTCAGAGGACTCAACTTCAAGAGTGATAGTCTTA 2169590 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || || ||||||||||| Sbjct 2169591 CCAGTCAAAGTCTTGACGAAAATTTGCAT 2169619 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||||||||||||||||||||| | | ||| ||| |||||| Sbjct 2169936 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCGTCTTCC 2169995 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || |||| | | ||||| || || | |||||||| || Sbjct 2169996 AATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 2170055 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | ||||||| | ||| || | ||||||| | || Sbjct 2170056 ATCTTAGACTTAACGTTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTA 2170115 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || || ||||||||||| Sbjct 2170116 CCAGTCAAAGTCTTGACGAAAATTTGCAT 2170144 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||| | | ||| ||| |||||| Sbjct 2170164 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCC 2170223 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || | || | ||||||||| || || | |||||||| || Sbjct 2170224 AATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 2170283 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | |||||| | |||| ||| | ||| ||| | || Sbjct 2170284 ATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACTTCCAAGGTAATGGTCTTA 2170343 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || || ||||||||||| Sbjct 2170344 CCAGTCAAAGTCTTGACGAAAATTTGCAT 2170372 >seq4 Length=2182181 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| | || || || || || ||||||||||| | | ||| ||| | Sbjct 2128794 TAAG-ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACCGT 2128852 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 ||||||| || || || || |||| | ||||||||| || || | |||||||| | Sbjct 2128853 CTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGT 2128912 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | || | |||||| | ||| ||||| || |||| ||| | ||| ||| Sbjct 2128913 CCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGG 2128972 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | || || || || || || || |||||||||||||| Sbjct 2128973 TCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 2129009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343939897685