Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4 143 5e-29 seq1 86.0 1e-11 >seq4 Length=2182181 Score = 143 bits (158), Expect = 5e-29 Identities = 293/432 (68%), Gaps = 15/432 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| |||||||| |||||||| || ||||| |||||| | ||||| ||||| |||||| Sbjct 397803 GTTGCTTTTGCTGCCGTTGAAGGTATTTTCTTCAGTGGTTCTTTCGCTTCCATCTTCTGG 397862 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| || ||| | |||| ||| | || | ||| || ||||| || | || || Sbjct 397863 TTGAAGAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCTAACGAGTTGATCTGCAGAGAT 397922 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||| || || || | || | ||| | | Sbjct 397923 GAAGGTTTGCACACTGACTTCGCCTGTTTGTTATTCTCCCAC-------TTGCAAAACAG 397975 Query 102098 TCAAGAGAAAGG-ATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || ||| |||| | | ||||||| |||||| ||||| |||||||| Sbjct 397976 ACCAGACCCAGTTATTGTTGAGAAGATCATCACTGAGGCCGTCAAGATTGAGCAAGAATT 398035 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 |||| | | |||| || || |||| |||||| | |||||||| |||| || Sbjct 398036 CTTCACCGACGCTTTGCCAGTCTCCTTGTTGGGTATGAACGCCGAGTTGATGTGCCAATA 398095 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAAT 102271 | | ||||| || || || | | ||||| ||| |||| || |||| | ||| || Sbjct 398096 CGTCGAATTCGTTGCCGACAGATTATTGATTGCTTTGGGTAACAAGAA--GGTCTACAAC 398153 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || |||||||| ||| |||||||| || || || | | |||||||||||| || Sbjct 398154 GTCACCAACCCATTCGACTTCATGGAAAACATCTCTTTGGCTGGTAAGACCAACTTCTTC 398213 Query 102332 GAAAAGAGAGTC 102343 || ||||||||| Sbjct 398214 GAGAAGAGAGTC 398225 >seq1 Length=3044122 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 35256 GAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTG- 35314 ||||| || || | ||||||| ||||||| | || | ||||||||||| ||| Sbjct 1793381 GAGGAATTATGCATGAACTCTTGTGGTTCGTTGCTGGAAGCACAGACGCCAAGTTGTTGA 1793440 Query 35315 GCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACA-GTAG 35373 || || ||| | | | |||||| | | ||||| || || || || ||||||| || | Sbjct 1793441 GCGAAAAAGGCGTGAAA-ATCTGGGAAGGAAATGGATCTCGTGAGTTCTTGGACAAGTTG 1793499 Query 35374 AGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCA 35433 || || ||| | ||| || ||||||||||| || ||||||||||| ||| | || Sbjct 1793500 -GGTTTGACCGAACGTAGAGAAGGTGATTTGGGACCAGTTTACGGATTCCAGTGGAGACA 1793558 Query 35434 TTTTGGTGCTGAATA 35448 ||| || |||||||| Sbjct 1793559 TTTCGGAGCTGAATA 1793573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583835172415