Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 159 5e-34 >seq4 Length=2182181 Score = 159 bits (176), Expect = 5e-34 Identities = 574/886 (65%), Gaps = 30/886 (3%) Strand=Plus/Plus Query 124999 TTCCCA-TCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 |||||| ||| ||| || || | ||| |||||||||| |||||| | || ||||| ||| Sbjct 397371 TTCCCAATCAAGTACCACGAAGTCTGGCAAATGTACAAGAAGGCTGAAGCTTCCTTCTGG 397430 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGA--CCTGTACGATTGGGAG-ACTCGTTTGACT 125114 || | ||||| |||| || ||||| || | || ||| | || ||| || Sbjct 397431 ACTGCTGAAGAAATCGACTTGAGTAAGGATACCACT--GACTGGAACCACAAGTTAAACA 397488 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 ||| || || | || || || | || ||||| ||||| |||| ||| || || ||| Sbjct 397489 AGAAC-GAAAGATACTTCATTTCCCGTATCTTGGCTTTCTTCGCCGCCTCTGACGGTATC 397547 Query 125175 GTCAACGACAATCTGTT-GACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||||||| || || | || | |||||| || | || ||||| | ||| Sbjct 397548 GTCAACGAGAACTTGGTCGAGAAC-TTCTCTGCCGAAGTCCAAATCCCAGAAGCCAAGTG 397606 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| |||||||||||||| || ||| | ||||| || | |||||| | || Sbjct 397607 TTTCTACGGTTTCCAAATCATGATGGAAAACATTCACTCCGAGACTTACTCTTTGTTAAT 397666 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAACGCAATCGACACG 125351 ||||| ||| || || | | | | || | || | || || ||||| || |||| Sbjct 397667 TGACACTTACGTTAAGGA--CCCTAAGGAAGCTGACTTCCTTTTCAACGCCATTGACAAC 397724 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | || | || | || |||||| | |||| | | |||||| ||| || || | Sbjct 397725 ATTCCATGCATCAGAAAGAAGGCTGATTGGGCTTTGAGATGGATCTCTGATGATGAGGCC 397784 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | || || || ||| | || || || || ||||| || || || ||||| ||| | Sbjct 397785 TTGTTCGGTGAAAGATTAGTTGCTTTTGCTGCCGTTGAAGGTATTTTCTTCAGTGGTTCT 397844 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || || ||||||| ||| | |||||| | || | ||||| || |||| | |||| Sbjct 397845 TTCGCTTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCTAAC 397904 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 ||||| || | |||| || || | ||| |||||| ||| | | | || | || Sbjct 397905 GAGTTGATCTGCAGAGATGAAGGTTTGCACACTGACTTCGCCTGTTTGTTATTCTCCCAC 397964 Query 125592 TATCTGCGTCCCGAGTGCAGATCCAG----CGATGAAAAGGTCATCAACATTGTAACCGA 125647 | ||| | || |||| |||| | ||| ||| ||||| || || Sbjct 397965 T---TGCAAAAC-AGACCAGACCCAGTTATTGTTGAGAAGATCATC---------ACTGA 398011 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 ||||| | ||| || ||||| || | ||||| | | || ||| | || | || || Sbjct 398012 GGCCGTCAAGATTGAGCAAGAATTCTTCACCGACGCTTTGCCAGTCTCCTTGTTGGGTAT 398071 Query 125708 GAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767 |||| | || | |||||| | ||| | || || || || || | || || | || Sbjct 398072 GAACGCCGAGTTGATGTGCCAATACGTCGAATTCGTTGCCGACAGATTATTGATTGCTTT 398131 Query 125768 GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACT 125827 | | | ||| | ||||||| || || || || || |||||| | ||| || | Sbjct 398132 GGGTAACAAGAAGGTCTACAACGTCACCAACCCATTCGACTTCATGGAAAACATCTCTTT 398191 Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 | |||||||||||||| |||||||||| ||||| || ||| || Sbjct 398192 GGCTGGTAAGACCAACTTCTTCGAGAAGAGAGTCAGTGACTACCAA 398237 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| || || || || || || ||||| ||| | ||| | |||||||| || | Sbjct 350289 GATACGTTGACCAAGGTGGTAACAAGCGTCCAGGTGCTTTTGCCTTGTACTTGGAGCCAT 350348 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||| | || ||||| || || || | || || || ||||| Sbjct 350349 GGCACGCAGACATCTTCGACTTCATTGACATCAGAAAGAATCACGGTAAGGAAGAAATCA 350408 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC 97040 ||||||| |||||||| || | ||| | |||||||||||||||||| | ||| Sbjct 350409 GAGCCAGAGACTTGTTCCCAGCTTTGTGGATTCCAGATTTGTTCATGAAGAGAGTC 350464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059079577880