Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 201 3e-46 seq2 132 1e-25 >seq4 Length=2182181 Score = 201 bits (222), Expect = 3e-46 Identities = 388/564 (69%), Gaps = 20/564 (4%) Strand=Plus/Plus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 |||||||| |||| | ||||| || ||||||| |||||| | || || | | || Sbjct 397401 ATGTACAAGAAGGCTGAAGCTTCCTTCTGGACTGCTGAAGAAATCGACTTGAGTAAGGAT 397460 Query 268802 TTAATAGATTGGAA--AAATTTAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTT 268858 | || ||||| | | | |||| |||| |||||| || || || ||| | Sbjct 397461 ACCACTGACTGGAACCACAAGTTAAACAAGAACGAAAGATACTTCATTTCCCGTATCTTG 397520 Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || || || | ||| |||||||| ||||| || | || ||||| |||| | Sbjct 397521 GCTTTCTTCGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGTCGAGAACTTCTCTGCC 397580 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 || || || || || ||||||| ||||| ||||| ||||| || || ||||| ||| Sbjct 397581 GAAGTCCAAATCCCAGAAGCCAAGTGTTTCTACGGTTTCCAAATCATGATGGAAAACATT 397640 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA 269038 || || |||| ||| | | ||||| || ||||| | ||| || ||| || Sbjct 397641 CACTCCGAGACTTACTCTTTGTTAATTGACACTTACGT------TAAGGACCCTAAGGAA 397694 Query 269039 A--GACTA--TTTTCTTCTA---TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATG 269091 |||| ||||| | ||| ||| | | || | ||||| || |||| || Sbjct 397695 GCTGACTTCCTTTTCAACGCCATTGACAACATTCCA-TGCATCAGAAAGAAGGCTGATTG 397753 Query 269092 GGCTCTGAAATGGATAAACGATAGCGCG-CCTTA--CGGAGAAAGGTTAGTTGCTTTTGC 269148 |||| ||| |||||| ||| | | |||| ||| ||||| |||||||||||||| Sbjct 397754 GGCTTTGAGATGGATCTCTGATGATGAGGCCTTGTTCGGTGAAAGATTAGTTGCTTTTGC 397813 Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 || || |||||||| ||||| || ||||| || | ||||| ||||||||||| || Sbjct 397814 TGCCGTTGAAGGTATTTTCTTCAGTGGTTCTTTCGCTTCCATCTTCTGGTTGAAGAAGAG 397873 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 ||| | |||||||| || |||||||||||||| ||||| |||| || |||||||| || Sbjct 397874 AGGTTTGATGCCAGGTTTGACTTTCTCTAACGAGTTGATCTGCAGAGATGAAGGTTTGCA 397933 Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292 | |||||||| ||||| ||||| Sbjct 397934 CACTGACTTCGCCTGTTTGTTATT 397957 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || || |||||||| || |||||||||||||| | || Sbjct 2128804 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCCAACTGC 2128863 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || | || ||||| ||||| || || ||||| || ||||| ||||| Sbjct 2128864 TTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTG 2128923 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| ||| | || || || | ||||| |||||||| || Sbjct 2128924 GACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCTGTT 2128983 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||||||| Sbjct 2128984 AAAGTCTTGACGAAAATTTGCATTTTG 2129010 >seq2 Length=2390349 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| ||||| || |||||||| ||||||||||||||||| | ||| || ||| Sbjct 2170404 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 2170463 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | || ||||| ||||| || || ||||| || || || ||||| | || Sbjct 2170464 GCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTG 2170523 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | || || || || || ||||||||||| || | ||| Sbjct 2170524 ACGTTGTCAATGGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTACCTGTTAATGTC 2170583 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 2170584 TTAACGAAGATTTGCATT 2170601 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| ||||| || |||||||| ||||||||||||||||| | ||| || ||| Sbjct 2169948 GTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCGTCTTCCAATTGCTTACCA 2170007 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| | |||||| ||||| || || ||||| || || || ||||| | || Sbjct 2170008 GCGAAGATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTAGACTTA 2170067 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || ||||| || || || ||||||||||| | || Sbjct 2170068 ACGTTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTACCAGTCAAAGTC 2170127 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 2170128 TTGACGAAAATTTGCAT 2170144 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||| ||||||||||||||||| | ||| || ||| Sbjct 2170176 GTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 2170235 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | || ||||| ||||| || || ||||| || || || ||||| | || Sbjct 2170236 GCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTA 2170295 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || || || || | ||||| ||||||||||| | || Sbjct 2170296 ACGTTGTCGATAGTGTCGGAAGACTCGACTTCCAAGGTAATGGTCTTACCAGTCAAAGTC 2170355 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 2170356 TTGACGAAAATTTGCAT 2170372 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||| |||||||| || ||||| | ||| || ||| Sbjct 2169423 GTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCTTCCAATTGCTTACCA 2169482 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || ||||| ||||| || || ||||| || || || ||||| | || Sbjct 2169483 GCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTA 2169542 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || || || || || |||||||||||||| | || Sbjct 2169543 ACGTTGTCGATAGTGTCAGAGGACTCAACTTCAAGAGTGATAGTCTTACCAGTCAAAGTC 2169602 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 2169603 TTGACGAAAATTTGCAT 2169619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398208220204