Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03-
24] 13 sequences; 16,750,582 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq4 188 2e-42
seq1 91.5 4e-13
>seq4
Length=2182181
Score = 188 bits (208), Expect = 2e-42
Identities = 604/923 (65%), Gaps = 18/923 (2%)
Strand=Plus/Plus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450
||||| | ||||| | |||| ||||||||| | ||| |||| || | | | ||||
Sbjct 349874 TTCGGTTTCAAGACTTTAGAGAGATCCTACCTTTTACGTGTCAACGGCAAGGTCGCTGAA 349933
Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510
| || || ||| || | ||| | ||| |||||||||| || | || ||||
Sbjct 349934 AGACCACAACATTTGATCATGAGAGTTTCTATTGGTATTCACGGTGACGACATTGAGAAG 349993
Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTC---GTGTATTCACGCACGCCACGCCAACA 363567
| |||||| | ||||| ||| | || ||| || | ||||| |||| | |||||
Sbjct 349994 GTCATTGAATCTTATAA-CTTG-ATGT-CTCAACGTTTCTTCACCCACGGTTCTCCAACT 350050
Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627
||| ||| ||||| || | |||||| ||||||||||| || ||| | ||||||
Sbjct 350051 TTGTTCAACGCTGGTACCCCATCTCCACAAATGTCTTCTTGTTTCCTTGTCGCCATGAAG 350110
Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687
||||| || || || ||||| | || || | |||| ||||| | |||||||||| |
Sbjct 350111 GACGACTCTATTGATGGTATTTACGATACCTTGAAGACCTGTGCCTTGATTTCCAAGAGT 350170
Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACATTCGCGG 363746
|| || || |||||| | || ||||| | || | ||| | ||||||| ||
Sbjct 350171 GCTGGTGGTATTGGTTTGCACATTCACAACATCCGTTCCACTG-GTGCTTACATTGCTGG 350229
Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806
|| || |||||| || | |||| ||| ||||||| || |||| ||||| ||
Sbjct 350230 TACTAATGGTACCTCGAACGGTATTATTCCAATGGTTCGTGTCTTCAACAACACTGCTAG 350289
Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866
||||| ||||| ||||| ||||| ||| || ||||| |||| | |||||
Sbjct 350290 ATACGTTGACCAAGGTGGTAACAAGCGTCCAGGTGCTTTTGCCTTGTACTTGGAGCCATG 350349
Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGAATTGC 363925
|| || || || || || || |||| || | || || ||| || || || ||| |
Sbjct 350350 GCACGCAGACATCTTCGACTTCATTGACATCAGAAAGAATCAC-GGTAAGGAAGAAATCA 350408
Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985
| || | || ||||| || | ||| || | || || |||||| | || ||
Sbjct 350409 GAGCCAGAGACTTGTTCCCAGCTTTGTGGATTCCAGATTTGTTCATGAAGAGAGTCGAAC 350468
Query 363986 CA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC-GATGTA 364041
| ||| ||||| | || || | ||| ||||| |||||| ||| || || ||
Sbjct 350469 AAAACGGT---GATTGGACTCTTTTCTCTCCAAACGAAGCTCCAGG-CTTGCCAGAAGTT 350524
Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101
| |||||||| | | | |||||||| || || || |||| | | | ||
Sbjct 350525 TACGGTGACGAATTCGAGGAGTTATACGAACGTTACGAGAGAGAAGGAAGAGGTAGAAAC 350584
Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161
|| | || || ||| | |||| || ||| |||| | |||| ||| || || ||
Sbjct 350585 ACTGTCAAGGCTCAAAAGTTGTGGTACGCTATCTTGGAAGCTCAGACTGAAACCGGTACT 350644
Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221
|| | ||||||||||| ||| | || ||| ||| ||||||| || || | |||| |
Sbjct 350645 CCTTTCATGTTGTACAAGGATGCCTGTAACAAGAAGACCAACCAAAAGAACTTGGGTATA 350704
Query 364222 ATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281
|| || ||| | ||| ||||| |||| ||| || |||| || || |||
Sbjct 350705 ATCAAGTCTTCTAACTTGTGTTGTGAGATCGTTGAGTACTCCTCTCCAGAAGAAGTTGCT 350764
Query 364282 GTATGTAACCTTGCGTCGATCGC 364304
|| |||||| | || ||||||||
Sbjct 350765 GTCTGTAACTTGGCCTCGATCGC 350787
>seq1
Length=3044122
Score = 91.5 bits (100), Expect = 4e-13
Identities = 251/370 (68%), Gaps = 16/370 (4%)
Strand=Plus/Plus
Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410
|||||| | | ||||| ||||||| || ||||| ||| | || || | ||| |
Sbjct 1793383 GGAATTATGCATGAACTCTTGTGGTTCGTTGCTGGAAGCACAGACGCCAA-GTTGTTG-A 1793440
Query 111411 GCAAAAAATG--TAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG 111468
|| ||||| | | ||||| ||||| ||||||||||| ||||| || | || |||||
Sbjct 1793441 GCGAAAAAGGCGTGAAAATCTGGGAAGGAAATGGATCTCGTGAGTTCTTGGACA-AGTTG 1793499
Query 111469 GTCTTGTCGACAACGAAGA--AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCA 111526
| ||| | |||| ||| ||||||| | ||||||||||||||||| || ||| | ||
Sbjct 1793500 GGTTTGACCG-AACGTAGAGAAGGTGATTTGGGACCAGTTTACGGATTCCAGTGGAGACA 1793558
Query 111527 CTTTGGTGCAGACTACAA-AACCATG-CAC-GACTCATATGATTCACAGGGAACTGATCA 111583
|| || || || ||||| | || ||| |||| | | || ||| ||| ||
Sbjct 1793559 TTTCGGAGCTGAATACAAGGATTGTGACACAGACTACACCGGT---CAAGGATTTGACCA 1793615
Query 111584 ATTACAGAATGTCATTGATCAAATTAAGAACAACCCA-ACTTCTCGTCGCATTATTATGA 111642
|| || ||||||| | | | |||| |||||| || | | | ||||| |||
Sbjct 1793616 GTTGCAAGATGTCATCAAGAAGTTAAAGACAAACCCATACGAC-AGAAGAATTATCATGT 1793674
Query 111643 GTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCC 111702
|| ||||| ||| | || | ||| ||||| | |||||||||||| | | ||||
Sbjct 1793675 CCGCTTGGAATCCACCAGACTTTGGAAAGATGGCCTTACCACCATGTCATGTCTTCTGCC 1793734
Query 111703 AGTTTTATGT 111712
|||| || ||
Sbjct 1793735 AGTTCTACGT 1793744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303353382910166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |