Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 seq4 98.7 9e-16 >seq2 Length=2390349 Score = 154 bits (170), Expect = 1e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| ||||||| |||| || ||||| ||| Sbjct 2170144 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTTGAGTCTTCT 2170085 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| ||||| ||||||||||||||| Sbjct 2170084 GACACTATCGACAACGTTAAGTCTAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 2170025 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || ||||| ||||| | | | ||| | || ||||| Sbjct 2170024 CAGCGTTTAATCTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTCTCTGACTACAAC 2169965 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 ||||||||||||||||| || || || || |||| Sbjct 2169964 ATTCAAAAAGAATCCACTCTTCACTTGGTTTTAAG 2169930 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || ||||| || || ||||| | ||||| | ||||| ||||| Sbjct 2170603 ACAATGCAAATCTTCGTTAAGACATTAACAGGTAAGACTATCACTCTTGAAGTCGAGTCC 2170544 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || | ||| || ||| ||||| ||||| |||||||||||| Sbjct 2170543 TCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 2170484 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | ||||| || || || ||||| ||||| | | | ||| | || ||| Sbjct 2170483 CAACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTCTGACTAC 2170424 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||||||||| || || || || |||| | ||||| || Sbjct 2170423 AACATTCAAAAAGAATCCACTCTTCACTTGGTTTTAAGATTGAGAGGTGG 2170374 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| |||| || | ||||| ||||| || Sbjct 2170372 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTCGAGTCTTCC 2170313 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| ||||| ||||||||||||||| Sbjct 2170312 GACACTATCGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 2170253 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||| || || || ||||| ||||| | | | ||| | || ||||| Sbjct 2170252 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTCTGACTACAAC 2170193 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| || || || || |||| | ||||| || Sbjct 2170192 ATCCAAAAGGAATCCACTCTTCACTTGGTTTTAAGATTGAGAGGTGG 2170146 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| | ||||| | ||||| ||||| ||| Sbjct 2169619 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACTATCACTCTTGAAGTTGAGTCCTCT 2169560 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| ||||| ||||||||||||||| Sbjct 2169559 GACACTATCGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 2169500 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || || || || ||||| ||||||| | ||| | || ||||| Sbjct 2169499 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGAACTCTTTCTGACTACAAC 2169440 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| || || || || | || | ||||| || Sbjct 2169439 ATCCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGG 2169393 >seq4 Length=2182181 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||||| || ||||| |||| || | ||||| ||||| || Sbjct 2129007 AATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCCTC 2128948 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||| || ||| ||||| ||||| |||||||||||| Sbjct 2128947 CGACACCATTGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGAC 2128890 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || || || || || || || ||||| | | | || | || ||| Sbjct 2128889 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTAC 2128830 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| | || || || |||| | ||||| || Sbjct 2128829 AACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGG 2128780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327931344595