Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 203 4e-47 >seq4 Length=2182181 Score = 203 bits (224), Expect = 4e-47 Identities = 600/906 (66%), Gaps = 27/906 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| |||||||| || | ||| | || || ||||| || ||||| || | Sbjct 398252 CATAACACCAGCCTTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTGGTCTTACCAGC 398193 Query 92850 CAAAGATATCGAATTCACT--AGT-GATTGGATTCTTGGCGTTATAA---TACTTTTCAC 92903 |||||| || | ||| | ||| || ||| || || |||| || | ||| | || Sbjct 398192 CAAAGAGAT-GTTTTCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACCTTCTTGTTAC 398134 Query 92904 CGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC 92963 | ||| | ||||||||| || || || ||||| | ||| || ||||||| || Sbjct 398133 C---CAAAGCAATCAATAATCTGTCGGCAACGAATTCGACGTATTGGCACATCAACTCGG 398077 Query 92964 AATTCATTCCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 ||||| || | ||| | || || | ||||||||| ||||| |||| ||| || Sbjct 398076 CGTTCATACCCAACAAGGAG-ACTGGCAAAGCGTCGGTGAAGAATTCTTGCTCAATCTTG 398018 Query 93023 ACGGCTTCTTTCAAGAT-TTCTATTACTCTA-CTA--TTTGGTGGTTTTTGTACGACATA 93078 ||||| || | | ||| |||| || || || | |||| ||||| | | | Sbjct 398017 ACGGCCTCAGTGATGATCTTCTCA-ACAATAACTGGGTCTGGTCTGTTTTGCAAGTGGGA 397959 Query 93079 ATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATT 93138 | | | || || || ||||| || || |||||||| |||| | |||||||| || Sbjct 397958 ---GAATAACAAACAGGCGAAGTCAGTGTGCAAACCTTCATCTCTGCAGATCAACTCGTT 397902 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 ||| || |||||||| | || |||| ||||| | ||| || || ||||| ||| Sbjct 397901 AGAGAAAGTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAAGCGAAAGA 397842 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 |||| || || |||||||| ||||| ||||| || || | | ||| | || || Sbjct 397841 ACCACTGAAGAAAATACCTTCAACGGCAGCAAAAGCAACTAATCTTTCACCGAACAAGGC 397782 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | ||||||| | ||||||||||| || || || | || || || | ||| Sbjct 397781 CTCATCATCAGAGATCCATCTCAAAGCCCAATCAGCCTTCTTTCTGATGCATGGAA-TGT 397723 Query 93319 T-TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | || || ||||| || ||| | || || | | || | ||| || || |||| Sbjct 397722 TGTCAATGGCGTTGAAAAGGAAGTCAGCTTCCTTAGGGTCCTTAACGTAAGTGTCAATTA 397663 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 ||| ||| || | || || || | || ||||| |||||||| ||||||||||| Sbjct 397662 ACAAAGAGTAAGTCTCGGAGTGAATGTTTTCCATCATGATTTGGAAACCGTAGAAACACT 397603 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 | ||||| | ||| || ||||| ||| || |||| || | || || ||||| |||| Sbjct 397602 TGGCTTCTGGGATTTGGACTTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACGATAC 397543 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTC-ATCATCTTTA 93556 | || || || || || |||||||| ||| | || || | | | || || | |||| Sbjct 397542 CGTCAGAGGCGGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTTA 397483 Query 93557 AGCTT---ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 | ||| | ||| || | ||| || | |||| |||||| ||||||| || Sbjct 397482 A-CTTGTGGTTCCAGTCAGTGGTATCCTTACTCAAGTCGATTTCTTCAGCAGTCCAGAAG 397424 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA 93673 || ||||| || || |||||||| | ||| | || || || | ||||| || | || Sbjct 397423 GAAGCTTCAGCCTTCTTGTACATTTGCCAGACTTCGTGGTACTTGATTGGGAAGAGAACG 397364 Query 93674 AAACGA 93679 |||||| Sbjct 397363 AAACGA 397358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860709510120