Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4 102 9e-17 seq2 87.8 2e-12 >seq4 Length=2182181 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || ||||| ||||| ||| |||||| || || ||||| |||| Sbjct 2128779 ACCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2128838 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || | ||||||||||||||| || | || || ||||| | ||| Sbjct 2128839 AAGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGG 2128898 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || |||| | | | |||||| || || || Sbjct 2128899 AATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGAC 2128958 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || ||||| || || |||| ||||| || || ||||||||||| Sbjct 2128959 TTCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 2129009 >seq2 Length=2390349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || ||||| || | ||| || |||||||| ||||| |||| Sbjct 2170373 ACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGA 2170432 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || | |||||||||||||| || | || || ||||| | ||| Sbjct 2170433 AAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGG 2170492 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||| ||| || |||| ||| | | | ||||| || || | Sbjct 2170493 AATACCTTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCGA 2170551 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | ||||| || || || |||| ||||| || |||||||||||| Sbjct 2170552 CTTCAAGAGTGATAGTCTTACCTGTTAATGTCTTAACGAAGATTTGCATT 2170601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 ||||||| |||| ||||| || | ||| ||||| || | ||| |||||||| || || Sbjct 2169383 AATTTATTGACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTT 2169442 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| |||| ||||| | | || || | |||||||||||||| || | || || || Sbjct 2169443 GTAGTCAGAAAGAGTTCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTG 2169502 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGC 42150 ||| | ||| | | ||||||| | || | || | | | ||| | | | ||||| Sbjct 2169503 GTCAGGTGGAATACCTTCCTTGT-CTTGGATCTTGGACTTAACGTTGTCGATAGTGTCAG 2169561 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || | ||||| || || || || | ||||| || || |||||||| Sbjct 2169562 AGGACTCAACTTCAAGAGTGATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2169619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212711727920