Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq4 105 6e-18 >seq2 Length=2390349 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | ||| || || |||||||| Sbjct 2170170 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGC 2170229 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||||| ||| ||||| || ||||| ||||| || ||||| | | || Sbjct 2170230 TTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGA-TCTT 2170288 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | | | || | || | |||||||||||||||||||| | |||| || || || || Sbjct 2170289 GGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACTTCCAAGGTAATGGTCTTACCAGT 2170348 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || ||||||||||| Sbjct 2170349 CAAAGTCTTGACGAAAATTTGCAT 2170372 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || || || |||||||||||||| || || || | ||| | | Sbjct 2169405 CTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCA 2169464 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || ||| | ||||||| ||| ||||| || ||||| ||||| || Sbjct 2169465 TCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTG 2169524 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| | | || | | | || | || | ||||| || ||||| ||||| ||||| | Sbjct 2169525 TCTTGGA-TCTTGGACTTAACGTTGTCGATAGTGTCAGAGGACTCAACTTCAAGAGTGAT 2169583 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || || ||||||||||| Sbjct 2169584 AGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2169619 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||| || || || || | ||| || || |||||||| Sbjct 2170398 TGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGC 2170457 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||||| ||| ||||| || ||||| ||||| || ||||| || || Sbjct 2170458 TTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 2170517 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| || ||||||||||| ||||| | || || || || Sbjct 2170518 GACTTGA-CGTTGTCAATGGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTACCTGT 2170576 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 2170577 TAATGTCTTAACGAAGATTTGCAT 2170600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||| || || || || || ||| || || |||||||| Sbjct 2169942 TGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCGTCTTCCAATTGC 2170001 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || || || || ||||| || ||||| ||||| || ||||| || || Sbjct 2170002 TTACCAGCGAAGATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTA 2170061 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||||| |||||||| || ||||| || | || || || || Sbjct 2170062 GACTTAA-CGTTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTACCAGT 2170120 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || ||||||||||| Sbjct 2170121 CAAAGTCTTGACGAAAATTTGCAT 2170144 >seq4 Length=2182181 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||| ||||| || || || | |||| || || ||||| || Sbjct 2128804 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCCAACTGC 2128863 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||||| ||| ||||| || ||||| ||||| || || || || || Sbjct 2128864 TTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTG 2128923 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||||||| ||||||||||| | |||| || || || ||| Sbjct 2128924 GACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCTGTT 2128983 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || ||||||||||| Sbjct 2128984 AAAGTCTTGACGAAAATTTGCAT 2129006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003126549480