Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 114 3e-20 seq4 107 5e-18 >seq2 Length=2390349 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| || |||||||||| ||||||||||| | ||| || || Sbjct 2169404 TCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCC 2169463 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||||| || |||||||| | | || ||||| || ||| ||||| Sbjct 2169464 ATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 2169523 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| |||| ||||| | | || || || | ||||| Sbjct 2169524 GTCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCAGAGGACTCAACTTCAAGAGTGAT 2169583 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | ||| || || |||||||| Sbjct 2169584 AGTCTTACCAGTCAAAGTCTTGACGAAAATTTG 2169616 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || || ||||| | ||||||||||| | ||| || || ||||||| || Sbjct 2169941 GTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCGTCTTCCAATTG 2170000 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || |||||||| | |||||| ||||| || ||| ||||| || || ||||| Sbjct 2170001 CTTACCAGCGAAGATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTT 2170060 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| |||| ||||| | | || || || | ||||| |||||||| || Sbjct 2170061 AGACTTAACGTTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTACCAGT 2170120 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||| || || |||||||| Sbjct 2170121 CAAAGTCTTGACGAAAATTTG 2170141 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||||| ||||||||||| | ||| || || ||||||| || Sbjct 2170169 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTG 2170228 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || ||||| || | | || ||||| || ||| ||||| || || ||||| Sbjct 2170229 CTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTT 2170288 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| |||| ||||| | | || || ||||| || || |||||||| || Sbjct 2170289 GGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACTTCCAAGGTAATGGTCTTACCAGT 2170348 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||| || || |||||||| Sbjct 2170349 CAAAGTCTTGACGAAAATTTG 2170369 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || || ||||| | ||||||||||| | ||| || || ||||||| || Sbjct 2170397 GTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTG 2170456 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || ||||| || | | || ||||| || ||| ||||| || || ||||| Sbjct 2170457 CTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTT 2170516 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | |||||| | | || || || | ||||| |||||||| || Sbjct 2170517 GGACTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTACCTGT 2170576 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || || || ||||| Sbjct 2170577 TAATGTCTTAACGAAGATTTG 2170597 >seq4 Length=2182181 Score = 107 bits (118), Expect = 5e-18 Identities = 159/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| | ||| | ||| | || |||||||| |||| ||||||||||| | || || || Sbjct 2128791 TCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACC 2128850 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| |||||| || |||||||| | | || ||||| || ||| ||||| Sbjct 2128851 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 2128910 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| ||| || || | |||||| | | || || ||||| || || Sbjct 2128911 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 2128970 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 |||||||| || | ||| || || |||||||| |||||| || Sbjct 2128971 GGTCTTACCTGTTAAAGTCTTGACGAAAATTTG---CATTTTGGC 2129012 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 167767 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 167826 ||| |||||||| | ||||| || |||| || | ||||| |||| || || Sbjct 350668 GGCATCCTTGTACAACATGAAAGGAGTACCGGTTTCAGTCTGAGCTTCCAAGATAGCGTA 350609 Query 167827 CCAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATA 167886 ||| | | ||| || || || || |||| ||||||||||| | ||||| | || || Sbjct 350608 CCACAACTTTTGAGCCTTGACAGTGTTTCTACCTCTTCCTTCTCTCTCGTAACGTTCGTA 350549 Query 167887 GAGGTCTTCGAAATCCTTCCCGTAAATTTC-GTCAAGACCGGGAGCTTCCTTCGGACAAA 167945 | || ||||| || | ||||||| ||| | |||| || |||||||| || ||| | | Sbjct 350548 TAACTCCTCGAATTCGTCACCGTAAACTTCTGGCAAG-CCTGGAGCTTCGTTTGGAGAGA 350490 Query 167946 AGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAA 167985 | ||| |||||| || | ||||| ||||||||||| Sbjct 350489 AAAGAGTCCAATCACCGTTTTGTTCGACTCTCTTCATGAA 350450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921403635871