Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 190 5e-43 seq4 165 2e-35 >seq2 Length=2390349 Score = 190 bits (210), Expect = 5e-43 Identities = 176/223 (79%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| ||||||||||| ||||| || | |||||| Sbjct 2170379 TCTCAATCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGT 2170438 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| ||||| || | || ||||||||| || ||||| || Sbjct 2170439 TCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACC 2170498 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||||||||| ||||||||||| || || |||||||| Sbjct 2170499 TTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCAAG 2170558 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||| ||||| || || || ||||| | ||||||| Sbjct 2170559 AGTGATAGTCTTACCTGTTAATGTCTTAACGAAGATTTGCATT 2170601 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | |||||||||||| || ||||| || ||||| || | |||||| Sbjct 2169398 TCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 2169457 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | |||||||| |||||||| | || ||||||||| || ||||| || Sbjct 2169458 TCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACC 2169517 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| || || ||||| || || |||||||| Sbjct 2169518 TTCCTTGTCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCAGAGGACTCAACTTCAAG 2169577 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||||||| || ||||| | |||||| Sbjct 2169578 AGTGATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2169619 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| || ||||| || ||||| || | |||||| Sbjct 2170151 TCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 2170210 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| ||||| || | || ||||||||| || ||||| || Sbjct 2170211 TCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACC 2170270 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| || || ||||| ||| || ||||| | Sbjct 2170271 TTCCTTGTCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACTTCCAA 2170330 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || |||||||| || ||||| | |||||| Sbjct 2170331 GGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2170372 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||| ||||| | |||||||||||| ||||||||||| ||||| || | |||||||| || Sbjct 2169929 TCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACC 2169988 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||||| | |||||||| |||||||| | || |||||||| || ||||| ||||| || Sbjct 2169989 GTCTTCCAATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTT 2170048 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||| || || ||| ||||| || || ||||| ||| || || || ||||| | Sbjct 2170049 GTCTTGGATCTTAGACTTAACGTTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGAT 2170108 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || |||||||| || ||||| | |||||| Sbjct 2170109 GGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2170144 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| ||||||||||| ||||| || | ||||| Sbjct 2169626 TCTCAATCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGT 2169685 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||| || ||||| | |||||||| |||||| Sbjct 2169686 TCTACCGTCTTCCAATTGCTTACCAGCGAAG 2169716 >seq4 Length=2182181 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||| | |||||||| || || || ||||| || | ||| || Sbjct 2128785 TCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 2128844 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | ||||||||| |||||||| | || ||||||||| || ||||| || Sbjct 2128845 TCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACC 2128904 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||| || ||||||||||| || || ||||| | Sbjct 2128905 TTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAA 2128964 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| ||||| ||||| || ||||| | |||||||| Sbjct 2128965 GGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTT 2129008 Score = 93.3 bits (102), Expect = 9e-14 Identities = 183/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAA-AAGCCCGGAGGTGATGACCTG 160570 ||||||| |||||||| ||||| | || | |||| || | ||| || || Sbjct 350348 TGGCACGCAGACATCTTCGACTTCATTGACATCAGAAAGAATCACGGTAAGGAAGAA--- 350404 Query 160571 ATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTG 160630 || ||||||||||| | ||| || | |||| | | ||| | |||||||||||||| Sbjct 350405 ATCAGAGCCAGAGACTTGTTCCCAGCTTTGTGGATTCCAGATTTGTTCATGAAGAGAGTC 350464 Query 160631 AAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTG-ATGATGT 160689 || | || || ||||||| ||||||| ||| || ||||| || || |||| || || Sbjct 350465 GAACAAAACGGTGATTGGACTCTTTTCTCTCCAAACGAAGCTCCAGG-CTTGCCAGAAGT 350523 Query 160690 TTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAA 160749 ||| ||| ||| |||||| | || ||| | ||||| | ||| ||||||| | ||| Sbjct 350524 TTACGGTGACGAATTCGAGGAGTTATACGAACGTTACGAGAGAGAAGGAAGAGGTAGAAA 350583 Query 160750 GGTCGTGAAGGCCCAAGAACTGTGG 160774 || ||||| ||| | ||||| Sbjct 350584 CACTGTCAAGGCTCAAAAGTTGTGG 350608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481415201971