Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 201 1e-46 seq5 147 2e-30 >seq4 Length=2182181 Score = 201 bits (222), Expect = 1e-46 Identities = 383/559 (69%), Gaps = 5/559 (1%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| || || ||| || | || || ||||| | ||||| || ||||| || || Sbjct 397952 CAAACAGGCGAAGTCAGTGTGCAAACCTTCATCTCTGCAGATCAACTCGTTAGAGAAAGT 397893 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 ||||| ||||||| ||||| || || |||||||| || ||||| || || ||| || Sbjct 397892 CAAACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAAGCGAAAGAACCACTGAA 397833 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CATCATTAT 19135 ||| |||||||| || || ||||||||||||| |||||| || ||| || | |||| || Sbjct 397832 GAAAATACCTTCAACGGCAGCAAAAGCAACTAATCTTTCACCG-AACAAGGCCTCATCAT 397774 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 | |||||| ||| |||||||||||||||||| | | ||||| || | || || | Sbjct 397773 CAGAGATCCATCTCAAAGCCCAATCAGCCTTCTTTCTGATGCATGGAATGTTGTCAATGG 397714 Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 || || || | | || | | || ||||| || | || || || ||| || Sbjct 397713 CGTTGAAAAGGAAGTCAGCTTCCTTAGGGTCCTTAACGTAAGTGTCAATTAACAAAGAGT 397654 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 | | || || ||||| ||||| || || || || ||||| ||||| | ||||||| Sbjct 397653 AAGTCTCGGAGTGAATGTTTTCCATCATGATTTGGAAACCGTAGAAACACTTGGCTTCTG 397594 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 || || ||||| | | || | |||||||| || || || || || || ||| | Sbjct 397593 GGATTTGGACTTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACGATACCGTCAGAGG 397534 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA--TGT-AT 19432 | || || || || || | | | ||| || | | |||| | | |||| ||| | Sbjct 397533 CGGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTTAACTTGTGGT 397474 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 |||| ||| | |||| ||| || || | ||||||| | ||||| || ||||| || | Sbjct 397473 TCCAGTCAGTGGTATCCTTACTCAAGTCGATTTCTTCAGCAGTCCAGAAGGAAGCTTCAG 397414 Query 19493 CTTTTTTATACATGTTCCA 19511 | || || ||||| | ||| Sbjct 397413 CCTTCTTGTACATTTGCCA 397395 >seq5 Length=1741095 Score = 147 bits (162), Expect = 2e-30 Identities = 330/491 (67%), Gaps = 11/491 (2%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || || ||||||| ||||| | || | || |||| || |||||||| ||||| Sbjct 322835 TCGACTGTAAACTGAATTGCTCTTGATGCAGCTTGCGTTCTCAAGTAATACATTCCAGTT 322894 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG-TTC 47095 || ||||| | |||| |||||||||| ||| || | ||| | || | || || Sbjct 322895 TTCAAACCCTTATTCCAAGCATAGAAATGACAACTTGTAAGTTTTCCAAAAGTTGGGTTT 322954 Query 47096 TGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCAT 47155 || || || |||| | || ||| |||||||| ||||| ||||||||||| Sbjct 322955 TGTAAGTAGA-TATTCATGCTCTGCAGCTGGTCAATAAACTTTCCTCTGTCAGCTGCCAT 323013 Query 47156 ATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTC 47215 || | |||||| || |||| |||||||| || |||||||| | | ||| || || | Sbjct 323014 GTCAACAATAACTCTCTGTGAAATCTCCCAAACAGTTTTATACAAGTCTTTTATCTCCTT 323073 Query 47216 TGGGAGATTAG---TATTTTGAATAGATCCTCCgttttc---tataattttgttttttaa 47269 ||||| ||||| |||| |||||||| |||||||| || ||||||||| | | Sbjct 323074 TGGGATATTAGCTATATTCTGAATAGA---ACCGTTTTCAAGAATGATTTTGTTTCTCAT 323130 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 | | || ||| | | ||| || || ||||||| || || || || Sbjct 323131 TGCGGATGTCCATAAACCTAAGTCAAGCAAGTCCTTCAAAAGATACTTGTTCACTATCTG 323190 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 || || ||||| ||||| || | |||||| |||| || || ||||| | | |||| Sbjct 323191 GAACTCGCCAGAGAGTACCCTTCTAGTATATAAATTAGAAGTGTAAGGTTCAAAACATTC 323250 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 |||| |||| |||||||| ||||| || || ||||| | || ||||| ||| || Sbjct 323251 ATTAAAGCCAAGAATTTGAGAGGTTGAGGCCGTTGGCATAGGAGCCACTAACAAGGAGTT 323310 Query 47450 TCTTACTCCAT 47460 || | ||||| Sbjct 323311 CCTGAGTCCAT 323321 Score = 134 bits (148), Expect = 2e-26 Identities = 225/323 (70%), Gaps = 2/323 (1%) Strand=Plus/Plus Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTAGGA 48173 |||| || || ||||||| || || || || | | |||| || ||| ||||| ||| Sbjct 324006 TATACAATTTAACAAATTCTTCTCCGTAG-CAGTCTGCTAATCCGGGAGCTTCATCTGGA 324064 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 | | ||| ||||| || |||| ||| |||||| ||| || | ||| || ||||| Sbjct 324065 GAAAACAAAGACCAGTCTTCATTGTTTCGTACTCTCTCCATGAACAAATCGGGAATCCAT 324124 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293 | | | ||| || || | || || || ||||| ||||| ||| | || | || Sbjct 324125 AACCCAAAAAACAAGTCTCGTGTCCTGAGCTCTTCCTTGCCGTGGTTCTTCTTCAAGTCT 324184 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | || || | || |||||||||||||||||| |||||||| || | | ||||||| | Sbjct 324185 AAAATCTCGAATACATCAGCATGCCATGGTTCCAAATATATAGCAAAGGCCCCTGGTCTT 324244 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| ||||| ||||| | ||||| || |||| ||| | ||| | | ||| || || Sbjct 324245 TTATTTCCTCCCTGATCCACGTATCTAGCTGTATCGTTGAAGACTTTAAGCATAGGAACC 324304 Query 48414 ATACCATTTGATATACCATTGGT 48436 | |||| ||| | |||||||| Sbjct 324305 AAACCACTTGCCGTTCCATTGGT 324327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108708657320