Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4 150 9e-32 seq5 134 7e-27 >seq4 Length=2182181 Score = 150 bits (166), Expect = 9e-32 Identities = 291/424 (69%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||| |||| | | ||||||| | ||||| || ||| ||| ||| || ||||||||| Sbjct 350499 TTTGGAGAGAAAAGAGTCCAATCACCGTTTTGTTCGACTCTCTTCATGAACAAATCTGGA 350440 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||||| || || || ||||| ||||| |||||||| || |||||||||||| | Sbjct 350439 ATCCACAAAGCTGGGAACAAGTCTCTGGCTCTGATTTCTTCCTTACCGTGATTCTTTCTG 350380 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | || | ||| || || || |||| ||||||||| || || || | |||||| |||| Sbjct 350379 ATGTCAATGAAGTCGAAGATGTCTGCGTGCCATGGCTCCAAGTACAAGGCAAAAGCACCT 350320 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 | || |||||||| || |||||||| ||||| | ||||| || | |||| Sbjct 350319 GGACGCTTGTTACCACCTTGGTCAACGTATCTAGCAGTGTTGTTGAAGACACGAACCATT 350260 Query 26129 GGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||| |||| | ||| || || || || | | ||| | | || || || | || Sbjct 350259 GGAA-TAATACCGTTCGAGGTACCATTAGTACCAGCAATGTAAGCACCAGTGGAACGGAT 350201 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA-ATCTGAAA 26246 | |||| || | ||| || |||||||| | || ||||| ||||| ||| || Sbjct 350200 GTTGTGAATGTGCAAACCAATACCACCAGCACTCTTGGAAATCAAGGCACAGGTCTTCAA 350141 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 |||||| |||| || | || || | ||||| | | | ||||||||||| | Sbjct 350140 -GGTATCGTAAATACCATCAATAGAGTCGTCCTTCATGGCGACAAGGAAACAAGAAGACA 350082 Query 26307 ATTG 26310 ||| Sbjct 350081 TTTG 350078 Score = 102 bits (112), Expect = 4e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 ||||| |||| ||| ||||||||| | | ||| || ||| |||| || |||||||| Sbjct 351348 AATTCACCAGCCAACACTCTTCTTGAGTAGATGTTAGAGGTGTATGGCTCGAAACATTCG 351289 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 || || || |||||||| || ||||| || ||||||||| || | ||||| || ||| Sbjct 351288 TTGTTACCCAAGATTTGGGAGGTAGAAGCAGTTGGCATTGGAGCAACTAATAAGGAGTTT 351229 Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 |||||||| | || | | || ||| || || ||||||||| Sbjct 351228 CTCAAACCGTGCTTGGCCAACTTTTGCTTCAAGGCATCCCAATC 351185 >seq5 Length=1741095 Score = 134 bits (148), Expect = 7e-27 Identities = 206/291 (71%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984 ||| ||||||| || ||||| |||||||| | || |||| || |||| | || | Sbjct 324095 ACTCTCTCCATGAACAAATCGGGAATCCATAACCCAAAAAACAAGTCTCGTGTCCTGAGC 324154 Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGT 26044 ||||| || ||||| ||||| || | ||||| | || || | ||| | ||||||||| Sbjct 324155 TCTTCCTTGCCGTGGTTCTTCTTCAAGTCTAAAATCTCGAATACATCAGCATGCCATGGT 324214 Query 26045 TCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCA 26104 || ||||| |||||||| ||| |||||| ||| || ||||| |||||||| || Sbjct 324215 TCCAAATATATAGCAAAGGCCCCTGGTCTTTTATTTCCTCCCTGATCCACGTATCTAGCT 324274 Query 26105 GTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGA 26164 || || ||||| ||||| | ||| ||||| || ||| ||| ||| || || || Sbjct 324275 GTATCGTTGAAGACTTTAAGCATAGGAACCAAACCACTTGCCGTTCCATTGGTACTGGCT 324334 Query 26165 ATCTTGGATCC-TGTCGATCTAATATCGTGAGCATGAATACCGATTCCACC 26214 || | || ||| |||| ||| |||| ||| |||| | || ||||| || Sbjct 324335 ATGTGGGCTCCATGTC-CTCTTATATTGTGGACATGTAGGCCAATTCCTCC 324384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039959908975