Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2 149 1e-30 seq4 123 4e-23 >seq2 Length=2390349 Score = 149 bits (164), Expect = 1e-30 Identities = 180/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||||| | |||| || | || | ||||| ||| || Sbjct 2170364 AATTTGCATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTT 2170423 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | |||||| || || ||||| || || || ||||| ||||| ||||| Sbjct 2170424 GTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTG 2170483 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || ||||| || ||||| || |||| || | || ||| || || || Sbjct 2170484 GTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGA 2170543 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| ||||| ||||| |||||||||| || || || || ||||||||| | Sbjct 2170544 GGACTCGACTTCAAGAGTGATAGTCTTACCTGTTAATGTCTTAACGAAGATTTGCATTGT 2170603 Query 193364 ATTAG 193368 ||||| Sbjct 2170604 ATTAG 2170608 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||||| |||||||||||||| | |||| || | || | || || || || Sbjct 2169383 AATTTATTGACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTT 2169442 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | ||||| ||| || ||||| || || || || || ||||| ||||| Sbjct 2169443 GTAGTCAGAAAGAGTTCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTG 2169502 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || ||||| || ||||| || |||| || | || ||||| || || Sbjct 2169503 GTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCAGA 2169562 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| ||||| ||||| ||||| || | || || || || |||||||| Sbjct 2169563 GGACTCAACTTCAAGAGTGATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2169619 Score = 116 bits (128), Expect = 7e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||||| | |||| || | || | || || || || Sbjct 2170136 AATTTGCATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTT 2170195 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | |||||| || || ||||| || || || ||||| ||||| ||||| Sbjct 2170196 GTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTG 2170255 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || ||||| || ||||| || |||| || | || ||||| ||||| Sbjct 2170256 GTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGA 2170315 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| ||||| | || || || ||||| || | || || || || |||||||| Sbjct 2170316 AGACTCGACTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2170372 Score = 96.9 bits (106), Expect = 6e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| ||| || ||||| || | |||||| || || ||||| || || || || Sbjct 2169954 TCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAG 2170013 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 ||||| | |||||| ||||| || || ||||| || ||||| || || | || | || Sbjct 2170014 ATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTAGACTTAACGTTG 2170073 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 ||||| || ||||||||||| || || || || || ||||| || | || || || Sbjct 2170074 TCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTACCAGTCAAAGTCTTGACG 2170133 Query 193350 AATATTTGCAT 193360 || |||||||| Sbjct 2170134 AAAATTTGCAT 2170144 >seq4 Length=2182181 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||||||||| | |||| ||||| || | ||| || || || ||||| || Sbjct 2128779 ACCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2128838 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | |||||| || || || || || || || || || ||||| ||||| ||||| || Sbjct 2128839 AAGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGG 2128898 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| || | ||| ||| || ||||| ||||| || Sbjct 2128899 AATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGAC 2128958 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| | || || || |||||||||| || || || || ||||||||||| Sbjct 2128959 TTCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 2129009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654253806160