Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4 165 1e-35 seq2 127 3e-24 >seq4 Length=2182181 Score = 165 bits (182), Expect = 1e-35 Identities = 558/861 (65%), Gaps = 32/861 (4%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| ||| || | |||| | ||||||||||| || ||||| || |||| || || Sbjct 398243 AGCCTTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAAGAGAT 398184 Query 17920 TAAATTCATAAAATCAAATGGATTAGTG--GTTTTATAATATTTTTCTTGTATT--AATT 17975 | ||| || || ||||| || ||| ||| || | ||||||| || Sbjct 398183 GTTTTCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACC----TTCTTGTTACCCAAAG 398128 Query 17976 CGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATAC 18035 | |||||||| || || || |||||||| ||||| ||||||| ||| ||||||| Sbjct 398127 CAATCAATAATCTGTCGGCAACGAATTCGACGTATTGGCACATCAACTCGGCGTTCATAC 398068 Query 18036 CTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | | | || || | ||| || | | ||||||| ||| |||| || | ||| Sbjct 398067 CCAACAAGGAGACTGGCAAAGCGTCGGTGAAGAATTCTTGCTCAATCTTGACGGCCTCAG 398008 Query 18096 TTATTATGTTTATTACCCTAGAT---TTTGG-CAATTTATTAATTATGTGATTATAATAT 18151 | || || || || || | | ||| | ||| || | | || || Sbjct 398007 TGATGATCTTCTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGGGAGA-------AT 397955 Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211 || ||||| || || |||||||| ||||||||||||||| | || || |||||| || Sbjct 397954 AACAAACAGGCGAAGTCAGTGTGCAAACCTTCATCTCTGCAGATCAACTCGTTAGAGAAA 397895 Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271 || || || ||||| | |||||| || || | ||| || || || |||||| || | Sbjct 397894 GTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAAGCGAAAGAACCACTG 397835 Query 18272 AAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTG 18331 ||||| ||||| |||||| || || || | |||||||||| | || | | | | Sbjct 397834 AAGAAAATACCTTCAACGGCAGCAAAAGCAACTAATCTTTCACCGAACAAGGCCTCA-TC 397776 Query 18332 CTCAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTAT 18390 |||| |||||| | ||||| || | | || || || || | || || Sbjct 397775 ATCAGAGATCCATCTCAAAGCCCAATCAGCCTTCTTTCTGATGCATGGAATGTTGTCAAT 397716 Query 18391 AGCATT---AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAA 18447 || || || || ||| | ||| || | || || | |||||||| |||||||| Sbjct 397715 GGCGTTGAAAAGGAAGTCAGC---TTCCTTAGGGTCCTTAACGTAAGTGTCAATTAACAA 397659 Query 18448 AGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGC 18507 ||| || | || || || ||| ||||||| || || |||| || || | | || Sbjct 397658 AGAGTAAGTCTCGGAGTGAATGTTTTCCATCATGATTTGGAAACCGTAGAAACACTTGGC 397599 Query 18508 CTC-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 || ||||| ||| | ||| | | || | || ||||| ||||| || || ||||||| Sbjct 397598 TTCTGGGAT-TTGGACTTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACGATACCGT 397540 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGAT 18626 ||| | ||||| || ||||| | | |||||| | | |||| || | || | | Sbjct 397539 CAGAGGCGGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTTAACT 397480 Query 18627 T---GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 | |||||| ||| |||| || | || | |||||| | ||||| || || | Sbjct 397479 TGTGGTTCCAGTCAGTGGTATCCTTACTCAAGTCGATTTCTTCAGCAGTCCAGAAGGAAG 397420 Query 18684 ATTCGGCCTGTTTGTACATTT 18704 ||| |||| |||||||||| Sbjct 397419 CTTCAGCCTTCTTGTACATTT 397399 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || || || || || || ||||| || |||||||| Sbjct 2129009 AAAATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCC 2128950 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || || || || || || ||||| || || || || Sbjct 2128949 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGAC 2128890 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | || ||||||||| | ||||| ||||| | || || || Sbjct 2128889 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTAC 2128830 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| | || | || || || |||||||| ||||| |||| Sbjct 2128829 AACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGGTG 2128778 >seq2 Length=2390349 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 155813 ATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGT 155872 || ||||| ||||||||| || |||| ||||| || || || ||||| || | ||||| Sbjct 2170610 ATCTAATACAATGCAAATCTTCGTTAAGACATTAACAGGTAAGACTATCACTCTTGAAGT 2170551 Query 155873 CGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACC 155932 ||| ||||| | ||| ||||| || || || ||||| || ||||| || || Sbjct 2170550 CGAGTCCTCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCC 2170491 Query 155933 TCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATC 155992 || || |||||||||||||||| || |||||||| | ||||| |||||| | || Sbjct 2170490 ACCTGACCAACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTC 2170431 Query 155993 AGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || || ||||| | || ||||| || || |||||||| ||||| ||| Sbjct 2170430 TGACTACAACATTCAAAAAGAATCCACTCTTCACTTGGTTTTAAGATTGAGAGGTGGT 2170373 Score = 122 bits (134), Expect = 1e-22 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || || ||||| || |||||||| ||| Sbjct 2170372 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTCGAGTCTTCC 2170313 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || || || || ||| Sbjct 2170312 GACACTATCGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 2170253 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || |||||||| | ||||| |||||| | || || || | Sbjct 2170252 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTCTGACTACA-- 2170195 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || || |||||||| ||||| ||| Sbjct 2170194 ACATCCAAAAGGAATCCACTCTTCACTTGGTTTTAAGATTGAGAGGTGGT 2170145 Score = 113 bits (124), Expect = 7e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || ||||| || | ||||| || ||| Sbjct 2169619 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACTATCACTCTTGAAGTTGAGTCCTCT 2169560 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || || || || ||| Sbjct 2169559 GACACTATCGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 2169500 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || |||||||| | |||||| ||||||| | || || || | Sbjct 2169499 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGAACTCTTTCTGACTACA-- 2169442 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || || || ||||| ||||| ||| Sbjct 2169441 ACATCCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGGT 2169392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871881070800