Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 111 5e-19 seq4 109 2e-18 seq1 87.8 5e-12 >seq10 Length=291736 Score = 111 bits (122), Expect = 5e-19 Identities = 119/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| |||||||| ||| || || |||||| | ||||| ||| Sbjct 31025 AGAATTTCCTTAAGACGAGGAACACCCAAGGTAACATT---CTTGGATGACACACCGGCA 31081 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | |||||||| |||| || | |||||||| ||||||||||||| ||| || ||||| Sbjct 31082 TAATGGAAAGTGTTCAACGTCATTTGAGTAGCTGGCTCACCAATAGATTGAGCAGCAATG 31141 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAATAGACTTCT 301969 | ||| |||||||| || || |||||||| |||| Sbjct 31142 ACACCCACCATTTCACCAGGATGAACAATAGATTTCT 31178 Score = 91.5 bits (100), Expect = 4e-13 Identities = 191/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || ||||||| | || | |||||||| |||||||||||||| | || || Sbjct 31795 CATGATATCTTCCAAAGCTTTAACCAAACGACGTTGAATATAACCAGTCTCTGCAGTCTT 31854 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG- 302683 ||||| ||||| || ||||| | | |||| ||||||| |||||||| | ||||| | Sbjct 31855 CACAGCAGTATCGATAAGACCTTCTCTACCAGCCATAGCGTGGAAGAAAAACTCTTGTGG 31914 Query 302684 -GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 ||| | || | ||| |||| ||||||||||||| | || || |||| ||| Sbjct 31915 AGTC-AATCCTCTCAA-GTAGGAATTCTCAACGAAACCCTTAGATTCTGGAGAATAGTCA 31972 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCA 302802 ||| || || || || | || || | || | || |||| |||||||| || || Sbjct 31973 TCCTTCGTGAAATGAGGTAAAGTTCTATCAGCAAAACCAAATGGAATACGCTTACCTTCG 32032 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || | || || || | || | | ||| ||||| || || Sbjct 32033 ACAATTTGTTGACCTACACATGCAGACATTTGCGAGATGTT 32073 >seq4 Length=2182181 Score = 109 bits (120), Expect = 2e-18 Identities = 201/294 (68%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCG 156082 |||||||| |||| |||||| ||| | |||| ||||| || || || || | Sbjct 350347 TGGCTCCAAGTACAAGGCAAAAGCACCTGGACGCTTGTTACCACCTTGGTCAACGTATCT 350288 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 |||||| || |||||||||| | ||| ||||||||||| || || || ||||| || || Sbjct 350287 AGCAGTGTTGTTGAAGACACGAACCATTGGAATAATACCGTTCGAGGTACCATTAGTACC 350228 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||| | | ||||| || || | || ||||| || | ||||||||||| | | Sbjct 350227 AGCAATGTAAGCACCAGTGGAACGGATGTTGTGAATGTGCAAACCAATACCACCAGCACT 350168 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || ||||| || || ||| | |||| | ||||||| |||||||| || || | Sbjct 350167 CTTGGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCATCAATAGAGTCGTCCTT 350108 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAA 156316 ||| | | || | || ||| | ||| || ||| || ||||||||||| Sbjct 350107 CATGGCGACAAGGAAACAAGAAGACATTTGTGGAGATGGGGTACCAGCGTTGAA 350054 >seq1 Length=3044122 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 233269 TGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATC 233328 || ||||||||||||||||||||||||||| ||||| || || | ||| | ||||||||| Sbjct 517895 TGCAGCACCGTGAGCAATCATACAATCACGCTCCATCTCTCCGAAACGTAAACCACCATC 517836 Query 233329 ATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATA 233388 | || ||||| | |||| ||| | || || || | |||||| ||| | Sbjct 517835 TCTAGATCTACCTTCCACTGGTTGTCTGGTCAAGACTTGTACTGGACCTCTAGCTCTGGC 517776 Query 233389 ATTAATTTTATCTTTAACCATATGCTTCAGTCT 233421 | ||| ||||| | ||||||||| ||| ||| Sbjct 517775 GTGAATCTTATCATCAACCATATGTCTCAATCT 517743 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 ||||||| | ||| || || || ||| ||||||| || || || | || |||| Sbjct 517964 ACCACACATTCCACAGACGTGAACTCTGAAAGCATCGGAGGCTTCCATCAAACGTTCCTT 517905 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 ||| | | |||||||| | ||||||||||||||||||||| || |||||||| | Sbjct 517904 CAAGAAACCTGCAGCACCGTGAGCAATCATACAATCACGCTCCATCTCTCCGAAACGTAA 517845 Query 251532 ACCACCATCGCGAGCCCTACCCTC 251555 ||||||||| | || ||||| || Sbjct 517844 ACCACCATCTCTAGATCTACCTTC 517821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817354850381