Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq3 86.0 5e-12 seq2 84.2 2e-11 >seq4 Length=2182181 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || ||||| |||||||| || || ||||||||| | ||| ||| | Sbjct 2129009 AAAATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCC 2128950 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || ||||| ||||| ||||| | || || Sbjct 2128949 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGAC 2128890 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | || ||||| ||| |||| || | ||||| | | || ||| Sbjct 2128889 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTAC 2128830 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || |||||| |||| |||||| || |||| || Sbjct 2128829 AACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGG 2128780 >seq3 Length=2328052 Score = 86.0 bits (94), Expect = 5e-12 Identities = 196/292 (67%), Gaps = 10/292 (3%) Strand=Plus/Plus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 ||||| || ||||| | ||| ||| | || |||||| ||||||||| || | Sbjct 1262166 TCAGTTTCTGGGTTCTTACAGGAGCCACAGAGAACGAACTTGTTGATGAAACCGTCCAAG 1262225 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 ||| || |||| |||||| || | |||||||| | | | || ||||| | | Sbjct 1262226 GCGTCTTGCAACTCGTTGGAGTCATGAGCACCGTTGACTAAGTAACGGTCGTTAGTTTCG 1262285 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAAT-GGCCGG 34496 |||| | | ||| || |||| ||| | ||||||||||| | || || || || Sbjct 1262286 TCGATGTTGGATTGAGCACCCAACTCAGATCCGAAGTACTT----GACTACATAAGCTGG 1262341 Query 34497 ACGT----CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGT 34552 | || ||||| | | || | ||||| || |||||| ||| |||||||||| |||| Sbjct 1262342 AGGTCTTCCCAAG-GATCTAGCAACTTCGGACAAGTTGACAATGGCAGTCTTGATACCGT 1262400 Query 34553 TGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAA 34604 | || | ||||| ||||| ||| | ||||| ||||| |||||||| Sbjct 1262401 TACCTCTACCTTCCGTCTTGGACTGGATTGGAGGCATCTTGTAACGGTAGAA 1262452 >seq2 Length=2390349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| ||||| || || || ||||| ||| |||| ||| || Sbjct 2170144 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTTGAGTCTTCT 2170085 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || || ||||| ||||| ||||| | || || ||| Sbjct 2170084 GACACTATCGACAACGTTAAGTCTAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 2170025 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || ||||| || |||| || | ||||| | | || |||||| Sbjct 2170024 CAGCGTTTAATCTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTCTCTGACTACAAC 2169965 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGA 110488 |||||||||||||| || | ||| |||| |||||| Sbjct 2169964 ATTCAAAAAGAATCCACTCTTCACTTGGTTTTAAGA 2169929 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 110269 TAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCC 110328 || ||||||||| || || || || ||||| || || || || || | ||| ||| | Sbjct 2170604 TACAATGCAAATCTTCGTTAAGACATTAACAGGTAAGACTATCACTCTTGAAGTCGAGTC 2170545 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 || || | | | | || || ||||| ||||| ||||| | || || Sbjct 2170544 CTCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGA 2170485 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||||||| | |||| || ||||| || |||| || | ||||| | | || || Sbjct 2170484 CCAACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTCTGACTA 2170425 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||||||| || | ||| |||| |||||| || |||| || Sbjct 2170424 CAACATTCAAAAAGAATCCACTCTTCACTTGGTTTTAAGATTGAGAGGTGG 2170374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841534590409