Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 seq4 147 4e-30 seq5 93.3 8e-14 >seq2 Length=2390349 Score = 168 bits (186), Expect = 1e-36 Identities = 182/240 (76%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | | ||| ||||| ||||| |||||||| || || || || |||| Sbjct 2170372 TACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAG 2170431 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||||||||||||| | ||| || ||||| || || | ||||||||| || || | Sbjct 2170432 AAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTG 2170491 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| | || || || ||||| || ||| | || | Sbjct 2170492 GAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCGA 2170551 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT--TATTATATT 82819 |||| | ||| || ||||| ||||| || ||||| || || || ||||| ||||| ||| Sbjct 2170552 CTTCAAGAGTGATAGTCTTACCTGTTAATGTCTTAACGAAGATTTGCATTGTATTAGATT 2170611 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | | ||| ||||| ||||| ||||| || || || || || |||| Sbjct 2170144 TACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAG 2170203 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||||||||||||| | ||| || ||||| || || | ||||||||| || || | Sbjct 2170204 AAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTG 2170263 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| | || || || || || || || || || | Sbjct 2170264 GAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGACTCGA 2170323 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 2170324 CTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2170372 Score = 140 bits (154), Expect = 6e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||| ||||| ||||| |||||||| || || || || ||||| ||| ||||||||||||| Sbjct 2169935 AACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCGTCTTC 2169994 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 | ||| || ||||| ||||||| | ||||| || || || || |||||||| ||||| Sbjct 2169995 CAATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTG 2170054 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 ||||| | || || || || || || ||| || || || || | || || ||||| Sbjct 2170055 GATCTTAGACTTAACGTTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTT 2170114 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || || || ||||| Sbjct 2170115 ACCAGTCAAAGTCTTGACGAAAATTTGCAT 2170144 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | | ||| ||||| ||||| |||||||| || || || || |||| Sbjct 2169619 TACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAG 2169678 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 | ||| ||||||||||||| | ||| || ||||| ||| Sbjct 2169679 AGAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAG 2169716 >seq4 Length=2182181 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | | || ||||||| || || || ||||| || || || ||||| Sbjct 2128779 ACCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2128838 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||||||||||||| | || || ||||| ||||| | ||||||||| || || || Sbjct 2128839 AAGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGG 2128898 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || ||||| | || ||||| ||||| || || | || || Sbjct 2128899 AATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGAC 2128958 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || || ||||| ||||| || ||||| || || || |||||| Sbjct 2128959 TTCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATT 2129007 >seq5 Length=1741095 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 18/215 (8%) Strand=Plus/Minus Query 143994 TTGCATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAAT 144053 ||||| | ||| | || |||||||| ||| | | | ||||| || || |||| ||| Sbjct 1052901 TTGCACAACGAATTGAGAAGATGGGCGGATATAATGTTAATAGCTCCTTTGTCAGCCAAT 1052842 Query 144054 ACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCC 144113 |||||||| |||||| ||||||||||| || || || ||||||||||| |||| | Sbjct 1052841 ACGTTAGCTAAAATATCCAATGGTATAGCAGACAACTTGTTAACATCTATAATAAGGTCA 1052782 Query 144114 TGGG----AT----------ATAAAT---AAACCTCTTATTTTTTGCCCC-GCTATGAAT 144155 |||| || | |||| ||| | |||| ||||||| || |||||| Sbjct 1052781 TGGGGCCCATCTACCACAGGACAAATCAAAAAGCCAATATTAGTTGCCCCAGCGATGAAT 1052722 Query 144156 ACCCTTATGTGGGAACATCCTATTACAGAAAAACA 144190 ||| | |||| ||||||||||||| |||||| Sbjct 1052721 ACCTTCATGTATACTCATCCTATTACAGCAAAACA 1052687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827036464407