Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 140 8e-28 seq4 129 1e-24 seq10 91.5 3e-13 >seq5 Length=1741095 Score = 140 bits (154), Expect = 8e-28 Identities = 540/847 (64%), Gaps = 11/847 (1%) Strand=Plus/Minus Query 110303 CTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCAT 110362 ||||||||| |||| || | || |||||||| | || |||| |||| Sbjct 324688 CTATTTTGGAATCAAGACATTGGAGAAATCTTATTTATTGAAGGTTGATGGAAAGATAGC 324629 Query 110363 TGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA 110422 |||| |||||| |||||||||| | ||||||||||| || |||||| || | || | Sbjct 324628 TGAAACCCCTCAATACATGTTTCTAAGGGTTGCGATTGGCATCCATGGAGATAACATGGA 324569 Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 || |||| | || || || || | ||| ||| | |||||| || | ||||| Sbjct 324568 AGATGTTGTCGAGACGTACGAGTTAATGTCTAATAAGTACTTTATTCACGCGTCCCCTAC 324509 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAA----TTGGCTTCTTGCTTTCTTCTAGGAA 110538 | | | || || ||||| |||| | || ||| | || |||||| | ||| || Sbjct 324508 CTTGTACAATGCTGGAAC----GGAGTATAACTACTTGTCATCATGCTTTTTAATAGCAA 324453 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598 | | || || || || || || || || | | | | |||| ||| | ||||| | Sbjct 324452 TGGAAGACGACTCCATCGACGGCATCTACAAGACGTTACATAAAACAGCTTTAATTTCAA 324393 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658 | || ||||||||||| | || || || |||| | | | ||||| | || | Sbjct 324392 AGGCATCCGGAGGAATTGGCCTACATGTCCACAATATAAGAGGACATGGAGCCCACATAG 324333 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 | | | || || | ||| ||| | ||||| ||| | | |||||||||||| || | Sbjct 324332 CCAGTACCAATGGAACGGCAAGTGGTTTGGTTCCTATGCTTAAAGTCTTCAACGATACAG 324273 Query 110719 CAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | | ||| ||| |||| || || ||| ||| || | |||||||| ||| | |||| Sbjct 324272 CTAGATACGTGGATCAGGGAGGAAATAAAAGACCAGGGGCCTTTGCTATATATTTGGAAC 324213 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 | |||||| | ||| |||| || | ||||| | || || || || ||||| | Sbjct 324212 CATGGCATGCTGATGTATTCGAGATTTTAGACTTGAAGAAGAACCACGGCAAGGAAGAGC 324153 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 || |||| || || |||| || | |||||| | ||||| |||||| | | || | Sbjct 324152 TCAGGACACGAGACTTGTTTTTTGGGTTATGGATTCCCGATTTGTTCATGGAGAGAGTAC 324093 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 | | |||| |||||| | | | ||| || |||| || || | || | Sbjct 324092 GAAACAATGAAGACTGGTCTTTGTTTTCTCCAGATGAAGCTCCCGGATTAGCAGACTGCT 324033 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC 111015 | ||| |||| |||| | | || || ||| || | || || || | || Sbjct 324032 ACGGAGAAGAATTTGTTAAATTGTATAAACGATACGAGATCGAGGGAAAAGCACATCAAG 323973 Query 111016 AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075 | | ||||||| | | ||| |||| | ||||||||| ||||| || || Sbjct 323972 TAGTAAAAGCTCAAAAGTTGTGGCATGCAATCTTAGAATCACAAACAGAAACAGGTGGTC 323913 Query 111076 CTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAA 111135 | ||||| || || |||||| | |||| ||||||||||||| || ||||| || Sbjct 323912 CATATATGTTATACAAAGATGCTTGTAATTTGAAATCTAATCAAAGCAACTTAGGTGTAA 323853 Query 111136 TTAAGTC 111142 | ||||| Sbjct 323852 TCAAGTC 323846 >seq4 Length=2182181 Score = 129 bits (142), Expect = 1e-24 Identities = 425/655 (65%), Gaps = 7/655 (1%) Strand=Plus/Plus Query 110510 ACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGA 110569 |||| || ||||||| || ||| | | || || || || |||||||| |||||||| || Sbjct 350077 ACAAATGTCTTCTTGTTTCCTTGTCGCCATGAAGGACGACTCTATTGATGGTATTTACGA 350136 Query 110570 TGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTC 110628 | | ||| |||| ||| | ||||| || | |||| || |||||| | ||| ||| Sbjct 350137 TAC-CTTGAAGACCTGTGCCTTGATTTCCAAGAGTGCTGGTGGTATTGGTTTGCACATTC 350195 Query 110629 ATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTG 110688 | | || || || | || || | || || | || ||| | || | || || Sbjct 350196 ACAACATCCGTTCCACTGGTGCTTACATTGCTGGTACTAATGGTACCTCGAACGGTATTA 350255 Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGA 110745 |||||||| | | ||||||||| ||||||| | ||| || | ||||||||| ||| Sbjct 350256 TTCCAATGGTTCGTGTCTTCAACAACACTGCTAGATACGTTGACCAAGGTGGTAACAAGC 350315 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 | || | ||||| | || | || || ||||| |||| || || || ||| | | Sbjct 350316 GTCCAGGTGCTTTTGCCTTGTACTTGGAGCCATGGCACGCAGACATCTTCGACTTCATTG 350375 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | | || ||||| || |||||| ||||| | || || || || ||| Sbjct 350376 ACATCAGAAAGAATCACGGTAAGGAAGAAATCAGAGCCAGAGACTTGTTCCCAGCTTTGT 350435 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 ||||| ||||||| |||||||| | || || |||| || ||| ||||| | | || Sbjct 350436 GGATTCCAGATTTGTTCATGAAGAGAGTCGAACAAAACGGTGATTGGACTCTTTTCTCTC 350495 Query 110926 CTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985 | | |||| || | | || || || || | || || || || | |||||| Sbjct 350496 CAAACGAAGCTCCAGGCTTGCCAGAAGTTTACGGTGACGAATTCGAGGAGTTATACGAAC 350555 Query 110986 AATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAA 111044 || || | |||||| ||| ||||| || | |||||| | | |||| | Sbjct 350556 GTTACGAGAGAGAAGG-AAGAGGTAGAAACACTGTCAAGGCTCAAAAGTTGTGGTACGCT 350614 Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAAT 111104 ||| | ||| | || |||||| || ||||||| || ||||| || ||| ||| Sbjct 350615 ATCTTGGAAGCTCAGACTGAAACCGGTACTCCTTTCATGTTGTACAAGGATGCCTGTAAC 350674 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || | || |||| ||| || || | ||| |||||| ||| ||||| |||| Sbjct 350675 AAGAAGACCAACCAAAAGAACTTGGGTATAATCAAGTCTTCTAACTTGTGTTGTG 350729 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/224 (70%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 131785 ATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGC 131844 ||| | |||| | | |||||| || || |||||| | | |||||| |||||| || Sbjct 397725 ATTCCATGCA-TCAGAAAGAAGGCTGATTGGGCTTTGAGATGGATCTCTGATGATGAGGC 397783 Query 131845 TAATTTTTC--TACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT 131902 || ||| | |||| | || ||||||||| ||||||||||| ||||| ||| Sbjct 397784 C--TTGTTCGGTGAAAGATTAGTTGCTTTTGCTGCCGTTGAAGGTATTTTCTTCAGTGGT 397841 Query 131903 GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCC 131962 ||||| | | ||||| ||| | |||||| | || |||||||| || | | || || Sbjct 397842 TCTTTCGCTTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCT 397901 Query 131963 AATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 || | || |||| |||||||||| ||||| ||||| || || Sbjct 397902 AACGAGTTGATCTGCAGAGATGAAGGTTTGCACACTGACTTCGC 397945 >seq10 Length=291736 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| ||||| | || |||||| |||| |||||| |||||||||||| | |||||| Sbjct 33018 GTTCTTTTCAACCGTCAGCCATCATTGCACAAAATGAGTATGATGGCTCACAGAGTCAAG 32959 Query 305390 GTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG-CTTGTACGCCTTATAATGCG 305446 || | || | || || ||||||| ||| || ||| | || ||||| || Sbjct 32958 GTTATGCCTTATTCCACTTTCAGATTAAACTTGTCTGTCACTTCT---CCATATAACGCC 32902 Query 305447 GATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAA 305506 ||||| ||||| ||||||||||| |||| || || ||||| | || | ||||| Sbjct 32901 GATTTCGATGGTGATGAAATGAACTTGCACGTTCCCCAATCCCCTGAAACCAGAGCTGAA 32842 Query 305507 TTATCAGAAATATGT 305521 ||||| ||||| ||| Sbjct 32841 TTATCCGAAATCTGT 32827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812602321493