Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq4 105 5e-18 >seq7 Length=1357872 Score = 114 bits (126), Expect = 1e-20 Identities = 246/365 (67%), Gaps = 22/365 (6%) Strand=Plus/Plus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| |||||||| ||||| |||| ||||||||| ||| || |||||||| Sbjct 260379 CCAAAGATTGTCAATGGTCCAGAAATGTTAAGTAAATATGTGGGTGCTTCCGAAGAAAAC 260438 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGT-TC 19547 | || ||||| || || |||| ||| | |||| ||| | ||| || Sbjct 260439 ATCCGTAACTTGTTCAAGGATGCCGAAGCTGAATACAAACAGAAAGG----AGAAGACTC 260494 Query 19548 ---TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG 19604 ||| || | || || | ||||| |||||| | | | ||||||||||| |||| Sbjct 260495 GGATTTACATGTCATCATTTTCGATGAGTTGGACTCTGTATTCAAGCAAAGAGGCTCTG- 260553 Query 19605 TGTAAAT-----------GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 |||||| || || |||| ||||| || ||| | | || || | Sbjct 260554 -GTAAATCTGATGGTACCGGTGTTGGAGACAACGTTGTTAACCAATTATTATCCAAGATG 260612 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTA 19713 || |||||| ||||| |||| ||||| ||||| ||||| ||||| || ||| |||| || Sbjct 260613 GATGGTGTTGACCAATTGAACAATATCTTAGTAATTGGTATGACCAACAGATTGGATTTG 260672 Query 19714 ATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCC 19773 || || || || || |||| || | || ||||| ||||||||||| || ||| Sbjct 260673 ATCGATGCAGCTTTGTTGAGACCAGGAAGATTCGAAATCCAGATCGAAATTTCATTGCCC 260732 Query 19774 GATGA 19778 ||||| Sbjct 260733 GATGA 260737 >seq4 Length=2182181 Score = 105 bits (116), Expect = 5e-18 Identities = 390/596 (65%), Gaps = 29/596 (5%) Strand=Plus/Plus Query 43710 TTCCAATTCAA-TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 |||| | |||| || || || | |||||||||||||| || || | || || || ||| Sbjct 397371 TTCCCAATCAAGTACCACGAAGTCTGGCAAATGTACAAGAAGGCTGAAGCTTCCTTCTGG 397430 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC--ATTGGATTGC--ATTAAAACC 43824 || || |||||| | || |||| ||| || || ||| | |||| | | |||| Sbjct 397431 ACTGCTGAAGAAATCGACTTGAGTAAGGA--TACCACTGACTGGAACCACAAGTTAAACA 397488 Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | || |||| | | || || || | ||||| || || || || ||||| || | Sbjct 397489 AGAACGAAAGATACTTCATTTCCCGTATCTTGGCTTTCTTCGCCGCCTCTGACGGTATCG 397548 Query 43884 TCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 |||| || || ||||| || | | || ||||| ||| | |||||||| ||| Sbjct 397549 TCAACGAGAACTTGGTCGAGAACTTCTCTGCC-GAAGTCCAAATCCCAGAAGCCAAGTGT 397607 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || ||||| || ||||| ||||| || || | ||| | | | || Sbjct 397608 TTCTACGGTTTCCAAATCATGATGGAAAACATTCACTCCGAGACTTACTCTTTGTTAATT 397667 Query 44003 GATACGTACATCAAAGATGGGCACGA--GAAGCATCGATTGTTT--AATGCGATAGA-AA 44057 || || ||| | || || | | | ||||| | ||| || || || || || Sbjct 397668 GACACTTACGTTAAGGA----CCCTAAGGAAGCTGACTTCCTTTTCAACGCCATTGACAA 397723 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 || | | ||| || | | | || || || ||||| | | |||||| || ||||| Sbjct 397724 CATTCCATGC-ATCAGAAAGAAGGCTGATTGGGCTTTGAGATGGATC---TCTGATGATG 397779 Query 44118 ----CTTTT--GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 ||| | || ||| || | || || ||||| | || ||||| |||||||| | Sbjct 397780 AGGCCTTGTTCGGTGAAAGATTAGTTGCTTTTGCTGCCGTTGAAGGTATTTTCTTCAGTG 397839 Query 44172 GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTT 44231 | || || || |||| || ||||| ||||| ||||||||||||| || ||||| || | Sbjct 397840 GTTCTTTCGCTTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGTTTGACTTTCT 397899 Query 44232 CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 | || ||||| || | | |||||||| || || || || || || |||||| Sbjct 397900 CTAACGAGTTGATCTGCAGAGATGAAGGTTTGCACACTGACTTCGCCTGTTTGTTA 397955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455937028065