Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 260 2e-64 seq6 105 8e-18 >seq4 Length=2182181 Score = 260 bits (288), Expect = 2e-64 Identities = 973/1508 (65%), Gaps = 43/1508 (3%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||||||||| || ||||| || | |||||| ||||||||| | |||||||| Sbjct 351361 GTTGACAATTTGGAATTCACCAGCCAACACTCTTCTTGAGTAGATGTTAGAGGTGTATGG 351302 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 || || ||||| || |||||||||||||| | ||| || || ||||||||||| || | Sbjct 351301 CTCGAAACATTCGTTGTTACCCAAGATTTGGGAGGTAGAAGCAGTTGGCATTGGAGCAAC 351242 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 110847 || | ||| | | ||| | || | || ||| | ||||||| || | Sbjct 351241 TAATAAGGAGTTTCTCAAACCGTGCTTGGCCAACTTTTGCTTCAAGGCATCCCAATCCCA 351182 Query 110848 GT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGA 110905 | || | | |||| | ||||||| |||||| || | || ||||| || || ||| Sbjct 351181 CAACTCAGTTGGCTTTCTC--TCCCACAAGTCAAATTGCAACAAGCCTTGAGATGCTGGA 351124 Query 110906 GAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG---CCAATTCACAGCTCGCCTCC 110962 |||||||| | | ||| || | ||||| |||||| | || ||| || || Sbjct 351123 GAACCCTCGTAAGATTCGTAAGGACCTT---CTTCAGAAGCTAACTCAATAGAGGCTTCG 351067 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | || |||| || || || || || || || ||| | || | ||||| | || Sbjct 351066 ACGGCACCGTGGTAGATAGTCTCGAAAATTTGAATATTTAATTCTCTAGCTTCTTGAGAG 351007 Query 111023 TCAAATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 || |||| ||| | ||| || || ||| || | ||||||||||||||| || Sbjct 351006 TCGAATG-GTAAT--CTCAATGCCATGAAAGTATCAGCCAAACCTTGAACACCCAAGGCA 350950 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTC 111138 || ||||| | || | ||||| | || || ||| ||| || || | |||||||| Sbjct 350949 ATTGGTCTATTTCTTTTGTTAGA-TCTCTCGGCTTCTGGAACTGGGTAGTAGTTTCTGTC 350891 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT- 111197 |||| ||| | || ||| ||| ||| |||| ||| || | || || | | Sbjct 350890 GATGATCTTGTTCAAGTTACGGGTGACAGACTTAGTGACTTCGTGCAACTTCTCGAAGTT 350831 Query 111198 ----CA-AAAG---TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAA 111249 || |||| || | || ||| || | | ||| | ||||| || ||||| Sbjct 350830 GTACCACAAAGACTTGTCATCCTTCTCAGCGAAAGA---TGGCAAAGCGATCGAGGCCAA 350774 Query 111250 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGA 111309 || || ||||| || || | | |||||| | || || ||| ||||| || Sbjct 350773 GTTACAGACAGCAACTTCTTCTGGAGAGGAGTACTCAACGATCTCACAACACAAGTTAGA 350714 Query 111310 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAG 111369 | ||| || | ||||| ||||||||||| |||||||||| || ||||||||||| | Sbjct 350713 AGACTTGATTATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAGGCATCCTTGTACAA 350654 Query 111370 CATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGG 111428 |||| | || || || || || ||||| | || | ||||| | ||| ||| | | | Sbjct 350653 CATGAAAGGAGTACCGGTTTCAGTCTGAGCTTCCAAGATAGCGTACCACAACTTTTGAGC 350594 Query 111429 CTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 || | ||| || | | | ||| || |||||| | ||| | | || || | Sbjct 350593 CTTG-ACAGTGTTTCTACCTCTTCCTTCTCTCTCGTAACGTTCGTATAACTCCTCGAATT 350535 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548 | ||||| | || | | ||||| || | || |||| ||||||||| ||| | || Sbjct 350534 CGTCACCGTAAACTTCTGGCAAGCCTGGAGCTTCGTTTGGAGAGAAAAGAGTCCAATCAC 350475 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 | || || || | ||||||||| | ||||||||||||| | || || | |||| Sbjct 350474 CGTTTTGTTCGACTCTCTTCATGAACAAATCTGGAATCCACAAAGCTGGGAACAAGTCTC 350415 Query 111609 T-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667 | | | || ||||| | ||| || || || | |||| ||| || | ||| || Sbjct 350414 TGGCTCTGA-TTTCTTCCTTACCGTGATTCTTTCTGATGTCAATGAAGTCGAAGATGTCT 350356 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGA 111721 |||||||||||||| | || | || | || || | ||||| ||| |||| Sbjct 350355 GCGTGCCATGGCTCCAAGTACAAGGCAAAAGCACC---TGGACGCTTGTTACCACCTTGG 350299 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | || || | || ||| ||| || || |||| ||||||||||||||| | || | Sbjct 350298 TCAACGTATCTAGCAGTGTTGTTGAAGACACGAACCATTGGAATAATACCGTTCGAGGTA 350239 Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841 ||||| || || ||| || | ||| | | | || ||||||| |||||| Sbjct 350238 CCATTAGTACCAGCAATGTAAGCACCAGTGGAACGGATGTTGTGAATGTGCAAACCAATA 350179 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || ||||| | ||| || || ||||| | | | || | || ||||| | || Sbjct 350178 CCACCAGCACTCTTGGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCATCAATA 350119 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 111961 ||||| ||||| |||||| |||||| ||| ||||| || || ||| |||||||| Sbjct 350118 GAGTCGTCCTTCATGGCGACAAGGAAACAAGAAGACATTTGTGGAGATGGGGTACCAGCG 350059 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCC 112021 ||||| | ||||| | |||| |||| | || ||| |||||| || || | || Sbjct 350058 TTGAACAAAGTTGGAGAACCGTGGGTGAAGAAACGTTGAGACATCAAGTTATAAGATTCA 349999 Query 112022 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGT 112081 | ||| |||||||| || ||||| || || || | || | ||||| || | ||| Sbjct 349998 ATGACCTTCTCAATGTCGTCACCGTGAATACCAATAGAAACTCTCATGATCAAATGTTGT 349939 Query 112082 GGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGA 112141 || |||| || |||| | || ||| ||| ||| |||| | || |||| | Sbjct 349938 GGTCTTTCAGCGACCTTGCCGTTGACACGTAAAAGGTAGGATCTCTCTAAAGTCTTGAAA 349879 Query 112142 CCAAAGTA 112149 || ||||| Sbjct 349878 CCGAAGTA 349871 >seq6 Length=1594198 Score = 105 bits (116), Expect = 8e-18 Identities = 273/409 (67%), Gaps = 13/409 (3%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | | | ||| | ||| | ||||||| | | ||||| | || Sbjct 87905 TCAAAACGGCCAGGTCTCAATAAGGCCTTATCCAAGATATCCGCTCTGTTAGTACCTGCC 87964 Query 11513 ATAACCACAATGCCAGTCTCAT-TGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 | ||| |||| | | || | |||| || |||||||| ||| | |||||| || | Sbjct 87965 AAAACAACAACGTGA-TCAGAGGTGTCGAAACCATCCATTTCGACCAATAATTGGTTCAA 88023 Query 11572 TGTTTGTTCTCTCTCATCATTTGC-----TGGCAT-ACCACCAGCACTGCGTTGCTTGCC 11625 || ||| | ||||||||| || |||||| ||| | || |||| || || Sbjct 88024 AGTAGTTTCACGCTCATCATTAGCACCACTGGCATTACCCTTCGAAC---GTTGTTTACC 88080 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685 | |||||||||||||||| || |||||| | || |||||| |||||| | | ||| Sbjct 88081 AATGGCATCAATCTCATCAACAAAAACAATAGAAGGAGCATTTTCACGGGCGGTCTTAAA 88140 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 | || || || || ||||| |||||||||||||| || ||||| | || |||| Sbjct 88141 CAAGTCACGCACTCTGGATGCACCAACACCAACAAACATTTCGACAAACTCTGATCCAGA 88200 Query 11746 GCACTGGATGAATGGG-ACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | | || ||| ||| | || || ||| | |||| || | | ||||| | Sbjct 88201 -CACAGAGTAAAAGGGTACACCCGCCTCTCCGGCGGTTGCTCTTGCAATTAAAGTCTTAC 88259 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | |||||||| || | | || || |||| |||||||| || || Sbjct 88260 CAGTACCTGGGGGTCCAGACAAAATTGCACCTCTTGGGATCTTTGCTCC 88308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031897944800