Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 174 4e-38 seq4 156 1e-32 >seq2 Length=2390349 Score = 174 bits (192), Expect = 4e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||||| || ||||||||||| || || | ||| || || |||||||||| || Sbjct 2169416 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCTTCCAATTG 2169475 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | | |||||||||||| |||| ||||||||||| |||||||| Sbjct 2169476 CTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTT 2169535 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| ||||| ||||||||| ||||| || |||||||| ||||| || || Sbjct 2169536 GGACTTAACGTTGTCGATAGTGTCAGAGGACTCAACTTCAAGAGTGATAGTCTTACCAGT 2169595 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | ||||| Sbjct 2169596 CAAAGTCTTGACGAAAATTTGCAT 2169619 Score = 168 bits (186), Expect = 2e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| |||||||| ||||| || || | || || || || Sbjct 2169929 TCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACC 2169988 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || |||||||| | || ||||||||||| |||| |||||||| Sbjct 2169989 GTCTTCCAATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTT 2170048 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| ||||| |||||||| ||||||||||| ||||| Sbjct 2170049 GTCTTGGATCTTAGACTTAACGTTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGAT 2170108 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | ||||| Sbjct 2170109 GGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2170144 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| |||||||| ||||| || || | ||| || || || Sbjct 2170385 TCTTAAAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCTACC 2170444 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || ||||| || | | |||||||||||| |||| |||||||| Sbjct 2170445 GTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 2170504 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| || |||||||||||| || || || |||||||| Sbjct 2170505 GTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCAAGAGTGAT 2170564 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 ||||| || || | ||||| || || | |||||| ||| Sbjct 2170565 AGTCTTACCTGTTAATGTCTTAACGAAGATTTGCATTGTAT 2170605 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| || ||||||||||| || || | ||| || || || Sbjct 2170157 TCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 2170216 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || ||||| || | | |||||||||||| |||| |||||||| Sbjct 2170217 GTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 2170276 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| ||||| ||||| || || || || | || || Sbjct 2170277 GTCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACTTCCAAGGTAAT 2170336 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | ||||| Sbjct 2170337 GGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2170372 >seq4 Length=2182181 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | |||||||| || |||||||| || || | |||||| || || Sbjct 2128791 TCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACC 2128850 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| |||||| || |||||||| | | |||||||||||| |||| |||||||| Sbjct 2128851 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 2128910 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| || || || || |||||||| ||| || || || | || || Sbjct 2128911 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 2128970 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || || | |||||||| Sbjct 2128971 GGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 2129009 Score = 84.2 bits (92), Expect = 5e-11 Identities = 198/299 (66%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 178085 ATTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 || || ||||||||||||||| |||| || | |||||| |||||| ||||| || Sbjct 350703 ATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAGGCATCCTTGTACAACATGAAAGGA 350644 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || |||| ||||| | | || | ||| | || || || |||||| Sbjct 350643 GTACCGGTTTCAGTCTGAGCTTCCAAGATAGCGTACCACAACTTTTGAGCCTTGACAGTG 350584 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 ||| | || ||||||| ||||||| || ||| | |||||||||||| || || Sbjct 350583 TTTCTACCTCTTCCTTCTCTCTCGTAACGTTCGTATAACTCCTCGAATTCGTCACCGTAA 350524 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 || || | || ||||| || || || |||| ||| |||| | ||||| || | Sbjct 350523 ACTTCTGGCAAGCCTGGAGCTTCGTTTGGAGAGAAAAGAGTCCAATCACCGTTTTGTTCG 350464 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCAT 178383 |||| |||||||| | || | |||| | || ||| | ||||||||||| || Sbjct 350463 ACTCTCTTCATGAACAAATCTGGAATCCACAAAGCTGGGAACAAGTCTCTGGCTCTGAT 350405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151806928745