Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118155.1_202017-03- 24] 13 sequences; 16,750,582 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 174 4e-38 seq4 152 1e-31 seq11 95.1 3e-14 >seq2 Length=2390349 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||||||||| ||||||| ||||| || | | |||||| || Sbjct 2169404 TCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCC 2169463 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||||||||| | || ||||||||| || |||||||||||||| Sbjct 2169464 ATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 2169523 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || ||||| ||||| |||| || || || | ||||| Sbjct 2169524 GTCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCAGAGGACTCAACTTCAAGAGTGAT 2169583 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 2169584 AGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 2169619 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||||||||| | ||||| || | | |||||| || ||||| | || Sbjct 2169941 GTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCGTCTTCCAATTG 2170000 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| | || |||||||| || |||||||||||||||||||||||||| Sbjct 2170001 CTTACCAGCGAAGATTAAACGCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTT 2170060 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||||| ||||| || | || || || | ||||| ||||| || || Sbjct 2170061 AGACTTAACGTTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTACCAGT 2170120 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | |||||| Sbjct 2170121 CAAAGTCTTGACGAAAATTTGCAT 2170144 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||| ||||||| ||||| || | | |||||| || ||||| | || Sbjct 2170169 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTG 2170228 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| |||||||| || | || ||||||||| || |||||||||||||||||||||||||| Sbjct 2170229 CTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTT 2170288 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||||| ||||| || | || || || || || || ||||| || || Sbjct 2170289 GGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACTTCCAAGGTAATGGTCTTACCAGT 2170348 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | |||||| Sbjct 2170349 CAAAGTCTTGACGAAAATTTGCAT 2170372 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||||||||| | ||||| || | | |||||| || ||||| | || Sbjct 2170397 GTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTG 2170456 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| |||||||| || | || ||||||||| || |||||||||||||||||||||||||| Sbjct 2170457 CTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTT 2170516 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || |||||||| |||| || || || | ||||| ||||| || || Sbjct 2170517 GGACTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTACCTGT 2170576 Query 225690 CAAAGTTTTTATGAACACTTGCATTTTAT 225718 || || || | ||| | ||||||| ||| Sbjct 2170577 TAATGTCTTAACGAAGATTTGCATTGTAT 2170605 >seq4 Length=2182181 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | ||||| || || |||| ||||| || | | ||||| || Sbjct 2128791 TCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACC 2128850 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | |||||| ||||||||||| | || ||||||||| || |||||||||||||| Sbjct 2128851 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 2128910 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| ||| || |||||||| |||| || || || || || || Sbjct 2128911 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 2128970 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | ||||||||| Sbjct 2128971 GGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 2129009 >seq11 Length=22788 Score = 95.1 bits (104), Expect = 3e-14 Identities = 194/286 (68%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 |||||||||||||||||| | || | ||| ||||||| | || | || ||| Sbjct 21043 TTATATTTAATATTTGGTATGGTATCAGCTATGGTAGGTACAGGTATGTCAGTTATAATA 20984 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 || | |||||||| | | |||| | || ||| |||| |||| | ||| Sbjct 20983 AGAATGGAATTAGCAACAGGAAATAGTCAATTCTTCCATGGAAATAACCAAGCATTTAAC 20924 Query 7564 GTTATTATTA-CGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 || |||| || | | ||||| || | |||||||||||| ||||||||||| || | || Sbjct 20923 GT-ATTAGTAACAGGTCATGCATTAGCTATGATTTTCTTATTTGTTATGCCAGTATTAAT 20865 Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682 || | || || |||| || || || | |||||||| | |||||||| ||| | Sbjct 20864 TGGAGCATTTGGTAATTTCTTAGTACCAGTTATGATTGGAGGAGTAGATATGGCATTTGC 20805 Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTT 7728 || | || ||||| |||||||||| |||| ||| | ||| || Sbjct 20804 TAGATTAAATAATATTAGTTTTTGATGTTTACCACCTGCATTAGTT 20759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531001369022