Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03]
2,380 sequences; 14,809,507 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq1836 129 9e-25
seq221 125 1e-23
seq481 104 3e-17
>seq1836
Length=79629
Score = 129 bits (142), Expect = 9e-25
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | |||||| ||||| |||||||||||||| || ||||| ||||| ||
Sbjct 56891 CCACCTCTCAATCTTAAAACCAAGTGTAAAGTAGATTCCTTTTGGATATTGTAATCAGAT 56950
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||||| | || |||||||| || ||||||||||| |||||||| || || || |||
Sbjct 56951 AAAGTTCTACCGTCTTCTAATTGCTTACCAGCAAAAATTAATCTTTGTTGGTCAGGTGGA 57010
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| || || ||| ||| |||
Sbjct 57011 ATACCTTCCTTGTCTTGGATCTTAGATTTAACATTGTCAATGGTGTCAGAAGATTCAACT 57070
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| || || || ||||| ||||| || |||| ||| ||||||||
Sbjct 57071 TCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 57117
Score = 111 bits (122), Expect = 2e-19
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || ||||| |||||||| ||||| || || || || || ||
Sbjct 57119 CCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 57178
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||||| | || ||||| || || || ||||||||||||||||| || || || |||
Sbjct 57179 AAAGTTCTACCGTCTTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCTGGTGGA 57238
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| ||| || ||| ||| |||
Sbjct 57239 ATACCTTCCTTGTCTTGGATTTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACT 57298
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| || || || ||||| ||||| || |||| ||| ||||||||
Sbjct 57299 TCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 57345
>seq221
Length=38424
Score = 125 bits (138), Expect = 1e-23
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 37654 CCACCTCTTAATCTCAAAACCAAATGTAAAGTAGATTCTTTTTGGATATTGTAATCACTT 37713
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| || |||||||| |||||||| || |||||||| ||||| || |||
Sbjct 37714 AAGGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 37773
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||||||
Sbjct 37774 ATACCTTCCTTATCTTG 37790
>seq481
Length=384
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || ||||| |||||||| ||||| || || || || || ||
Sbjct 210 CCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 269
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||||| | || ||||| || || || ||||||||||||||||| || || || |||
Sbjct 270 AAAGTTCTACCGTCTTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGA 329
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 330 ATACCTTCCTTGTCTTG 346
Score = 95.1 bits (104), Expect = 2e-14
Identities = 141/208 (68%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146070 CCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTA 146129
|||| |||||||| ||||| || || || || || || | |||||| | || ||||
Sbjct 1 CCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCTA 60
Query 146130 ATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNN 146189
| || || || ||||||||||||||||| || || || ||||| ||||| || |||||
Sbjct 61 ACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGA 120
Query 146190 NNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTAC 146249
||| || ||| ||| ||||||| || || || ||||
Sbjct 121 TTTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTAC 180
Query 146250 CTGTTAATGTTTTAATGAATATTTGCAT 146277
| ||||| || |||| ||| ||||||||
Sbjct 181 CAGTTAAAGTCTTAACGAAGATTTGCAT 208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743504280089600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |