Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq333 298 5e-76 >seq333 Length=169781 Score = 298 bits (330), Expect = 5e-76 Identities = 611/899 (68%), Gaps = 13/899 (1%) Strand=Plus/Plus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 ||||| || | ||||||| || |||||| |||||||| || ||||| || || | Sbjct 13652 ATAACACCAGCTCTTTGATAATCGGAAACTCTCTTTTCAAAGAAATTAGTCTTCCCAGCT 13711 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACC 13475 | || ||||| ||||| ||||| |||||||| ||| |||| | | || || | | ||| Sbjct 13712 AAGGAAATATTCTCCATGAAATCAAATGGATTAGTT-ACATTATATACCTTCTTATTACC 13770 Query 13476 TAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT 13535 | | | |||||||||||||| | |||||||| ||||||| ||||||| | | || Sbjct 13771 AAAAGCAACCAATAATCTATCAGCTACAAACTCAACATATTGACACATTAATCCCGAGTT 13830 Query 13536 CATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGC 13595 |||||||| | | || || | || ||| ||| |||| ||||| |||| ||||| Sbjct 13831 CATACCTAACAAACTAACTGGTAAAGCATCAGTGAAATATTCCTTTTCAATAGCAACAGC 13890 Query 13596 CTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13655 || ||||| | | | || || | ||| || |||| ||| ||| | Sbjct 13891 TTCAACAATAATTCTTTGCACGATTTCTGGATCAGGTCTATTCTTTAAATGGGCAAATAA 13950 Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 | ||| ||||||||| ||| | || |||||||| ||| | ||| || || || || Sbjct 13951 CATACAAGCAAAATCAGTATGTAATCCTTCATCTCTTGAAATTAATTCATTAGAGAAAGT 14010 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 |||||||||||| ||||||| ||| |||||||| || || | ||| || ||||| ||| Sbjct 14011 TAATCCTGGCATTAATCCTCTTTTCTTTAACCAGAAAATCGAAGCAAAGGATCCACTAAA 14070 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||| || || |||| |||||||| || | || || ||| || | | || | || | Sbjct 14071 GAAAATACCTTCAATAGCAGCAAAGGCAACTAATCTTTCAGCATATAAGGCATCCTTATC 14130 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 | |||||||| |||||| | | || || |||| | || || | ||||| Sbjct 14131 GGCGATCCATTTCAAAGCCCAGTTGGCCTTCTTGGCAATACATGGAATAGTATGAATTGC 14190 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAG--TACTTGAAAT--GTATGTATCAATAAGTAAGC 13951 || |||||| ||| |||| || | ||| | || |||| |||||| ||| || Sbjct 14191 ATCAAATAAAAATTCAGCTTCTTGAGGATCCTTAACATAAGTATCTATCAA-AAG--AG- 14246 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 ||| | |||||| || || |||| || || || |||||||| || | |||||| Sbjct 14247 AATAAACTTCAGAATGAATCATTTCAATCATGATTTGGAAACCATAGAATGCTTTAGCTT 14306 Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 | | ||| || || | | || |||| | || ||||||||||| ||||||||| Sbjct 14307 CAGGAACTTGAACTTCAGCACAGAAATTTTCCACTAAATTTTCATTAACTATACCATCAG 14366 Query 14072 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---T 14128 ||| ||||| || || |||| ||| || || | || | || || | | | Sbjct 14367 AAGCAGCAAAGAAGGCTAATACTCGGGAAATGAAATAACGTTCATTATCATTCAATCTAT 14426 Query 14129 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188 | ||||||||| |||||||||| | ||| | ||| ||| | ||||| || ||| Sbjct 14427 TGTTCCAATCGTGTAAATCCTTACTTAAATCGATTTCTTCAGCGGTCCAGAATGAAGCTT 14486 Query 14189 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14247 ||||||||||||||||| ||||||||| | |||| || || || | ||||||||| Sbjct 14487 CAGCTTTTTTATACATTTGCCATATTTCATGATATCTAATTGGGAATATAACAAATCTT 14545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478574561983200