Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1836 141 7e-29 seq221 136 3e-27 seq481 114 9e-21 >seq1836 Length=79629 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||||||||| || || | || || || ||||| || |||||||| | Sbjct 56891 CCACCTCTCAATCTTAAAACCAAGTGTAAAGTAGATTCCTTTTGGATATTGTAATCAGAT 56950 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| ||||||||||||| || ||||| | || || | ||||||||| |||| Sbjct 56951 AAAGTTCTACCGTCTTCTAATTGCTTACCAGCAAAAATTAATCTTTGTTGGTCAGGTGGA 57010 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || || || ||| | || ||||| || | ||| || Sbjct 57011 ATACCTTCCTTGTCTTGGATCTTAGATTTAACATTGTCAATGGTGTCAGAAGATTCAACT 57070 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||||| || ||||| || | ||| || || || ||||||||| Sbjct 57071 TCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCATA 57118 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| ||||| || || | ||||| || ||||| |||||||| || | Sbjct 57119 CCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 57178 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| |||||||||| || || || || | ||||| | ||||||||| |||| Sbjct 57179 AAAGTTCTACCGTCTTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCTGGTGGA 57238 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| |||||| ||| || | || || || || | ||| || Sbjct 57239 ATACCTTCCTTGTCTTGGATTTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACT 57298 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||||| || ||||| || | ||| || || || ||||||||| Sbjct 57299 TCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCATA 57346 >seq221 Length=38424 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| ||||| ||||| | || || |||||||| || |||||||| ||| Sbjct 37654 CCACCTCTTAATCTCAAAACCAAATGTAAAGTAGATTCTTTTTGGATATTGTAATCACTT 37713 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||| |||||||| ||||| | || || | |||||| || |||| Sbjct 37714 AAGGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 37773 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || ||| ||| || ||| | || ||||| ||| ||| || Sbjct 37774 ATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATGGTGTCGGAGGATTCGACT 37833 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || |||||||| ||||| || | || || || ||||||||||| || Sbjct 37834 TCCAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAAATTTGCATTTT 37883 >seq481 Length=384 Score = 114 bits (126), Expect = 9e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| || ||||| |||||||| || || | |||| |||||||||| || || || Sbjct 12 GTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCTAACTGCTTACCG 71 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | ||||| | ||||||||| |||||| ||||| ||||| |||||| ||| Sbjct 72 GCAAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTTTGGACTTG 131 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || || || || | ||| || ||||||||||| || ||||| || | ||| Sbjct 132 ACGTTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAAGTC 191 Query 15347 TTTACAAAAATTTGCATA 15364 || || || ||||||||| Sbjct 192 TTAACGAAGATTTGCATA 209 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| ||||| || || | ||||| || ||||| |||||||| || | Sbjct 210 CCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 269 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| |||||||||| || || || || | ||||| | ||||||||| |||| Sbjct 270 AAAGTTCTACCGTCTTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGA 329 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTAC 15288 || ||||| ||||| |||||| ||| || Sbjct 330 ATACCTTCCTTGTCTTGGATTTTGGACTTGAC 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362168694539580