Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq333 253 2e-62 >seq333 Length=169781 Score = 253 bits (280), Expect = 2e-62 Identities = 592/888 (67%), Gaps = 15/888 (2%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 ||||||| ||| |||||| |||||||| || || || || || |||| |||||||| | Sbjct 13665 TTTGATAATCGGAAACTCTCTTTTCAAAGAAATTAGTCTTCCCAGCTAAGGAAATATTCT 13724 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGTA 12977 |||| ||||| || ||||| | ||| || ||| || ||| || || | | | Sbjct 13725 CCATGAAATCAAATGGATTAGTT--ACATTA-TATACCTTCTTATTACCAAAAGCAACCA 13781 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | ||||| ||||| |||||||| | || || |||||| | ||||||| |||| | Sbjct 13782 ATAATCTATCAGCTACAAACTCAACATATTGACACATTAATCCCGAGTTCATACCTAACA 13841 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | | || || | ||| || || ||| | | ||||| ||| |||| ||||| | || | Sbjct 13842 AACTAACTGGTAAAGCATCAGTGAAATATTCCTTTTCAATAGCAACAGCTTCAACAATAA 13901 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGG---ATTTGATAGATGCTTAAACATCATACATG 13154 | |||| ||| | ||| ||| ||| || ||| ||| | |||||| | Sbjct 13902 T---TCTTTGCACGATTTCTGGATCAGGTCTATTCTTTAAATGGGCAAATAACATACAAG 13958 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||||| || |||||||||||||| |||| || || || || |||| || | Sbjct 13959 CAAAATCAGTATGTAATCCTTCATCTCTTGAAATTAATTCATTAGAGAAAGTTAATCCTG 14018 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | |||| ||| || | ||| || || | |||||| || || ||| || || | Sbjct 14019 GCATTAATCCTCTTTTCTTTAACCAGAAAATCGAAGCAAAGGATCCACTAAAGAAAATAC 14078 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 |||||| || ||||| || | || |||||| |||| || ||| | |||| Sbjct 14079 CTTCAATAGCAGCAAAGGCAACTAATCTTTCAGCATATAAGGCATCCTTATCGGCGATCC 14138 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 | || |||||||| || || | || || ||| | | ||||| | ||||| Sbjct 14139 ATTTCAAAGCCCAGTTGGCCTTCTTGGCAATACATGGAATAGTATGAATTGCATCAAATA 14198 Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 || | | ||| | | || || ||||||||||||||| | ||| | ||| | Sbjct 14199 AAAATTCAGCTTCTTGAGGATCCTTAACATAAGTATCTATCAAAAGAGAATAAACTTCAG 14258 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 ||||||| |||| ||| |||||||||||||| || | |||| || | || |||| Sbjct 14259 AATGAATCATTTCAATCATGATTTGGAAACCATAGAATGCTTTAGCTTCAGGAACTTGAA 14318 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 |||| | | || |||| |||| ||||| |||||||| || ||| ||||||||| | Sbjct 14319 CTTCAGCACAGAAATTTTCCACTAAATTTTCATTAACTATACCATCAGAAGCAGCAAAGA 14378 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAA---CTTTAACCAATCTG 13631 | || | || | ||| || | ||| || || ||| || |||||| Sbjct 14379 AGGCTAATACTCGGGAAATGAAATAACGTTCATTATCATTCAATCTATTGTTCCAATCGT 14438 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 | ||||| || |||||| | || ||| ||||||| || ||||| |||| || |||| Sbjct 14439 GTAAATCCTTACTTAAATCGATTTCTTCAGCGGTCCAGAATGAAGCTTCAGCTTTTTTAT 14498 Query 13692 ACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTTC 13739 |||| |||||| || | ||| ||| || || | ||| |||||| Sbjct 14499 ACATTTGCCATATTTCATGATATCTAATTGGGAATATAACAAATCTTC 14546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430969898816760