Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq333 239 1e-57 seq1836 168 2e-36 seq221 168 2e-36 seq481 132 1e-25 >seq333 Length=169781 Score = 239 bits (264), Expect = 1e-57 Identities = 577/867 (67%), Gaps = 15/867 (2%) Strand=Plus/Minus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| ||||| ||||| || ||| |||||| ||||| ||| | || | Sbjct 14544 AGATTTGTTATATTCCCAATTAGATATCATGAAATATGGCAAATGTATAAAAAAGCTGAA 14485 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 ||||| || ||||| | |||||| | ||| | | | || ||| |||||||| ||| Sbjct 14484 GCTTCATTCTGGACCGCTGAAGAAATCGATTTAAGTAAGGATTTACACGATTGGAACAAT 14425 Query 268820 TTAA--AACCAGAAGAAAGAAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTAGT 268876 | || | || || |||| || || | | || || ||||| | | | Sbjct 14424 AGATTGAATGATAATGAACGTTATTTCATTTCCCGAGTATTAGCCTTCTTTGCTGCTTCT 14365 Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 |||||||| ||||| |||||| |||| || || |||||| || || || |||||||| Sbjct 14364 GATGGTATAGTTAATGAAAATTTAGTGGAAAATTTCTGTGCTGAAGTTCAAGTTCCTGAA 14305 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | | || || || ||||| || || |||| |||||||| || | || | Sbjct 14304 GCTAAAGCATTCTATGGTTTCCAAATCATGATTGAAATGATTCATTCTGAAGTTTATTCT 14245 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 || || |||||||||||| | | ||| | ||| || ||||| | | || Sbjct 14244 CTTTTGATAGATACTTATGTTAAGGATCCTCAAGAAGCTGAATTTTTATTTGATGCAATT 14185 Query 269057 AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC 269116 ||||| ||| | || || | | |||||| |||||||||| ||||| Sbjct 14184 CATACTATTCCATGTATTGCCAAGAAGGCCAACTGGGCTTTGAAATGGATCGCCGATAAG 14125 Query 269117 GC-GCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCG 269173 | |||||| | ||||| |||||||| ||||| ||| | |||||||| |||||| Sbjct 14124 GATGCCTTATATGCTGAAAGATTAGTTGCCTTTGCTGCTATTGAAGGTATTTTCTTTAGT 14065 Query 269174 GGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTC 269233 || || ||||| | || || ||||| ||||||||||| | |||||||||||||||||| Sbjct 14064 GGATCCTTTGCTTCGATTTTCTGGTTAAAGAAAAGAGGATTAATGCCAGGATTAACTTTC 14005 Query 269234 TCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTT 269293 ||||| ||||| || || || ||||| ||||| || || |||||| | |||||| Sbjct 14004 TCTAATGAATTAATTTCAAGAGATGAAGGATTACATACTGATTTTGCTTGTATGTTATTT 13945 Query 269294 ACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCT 269353 | ||| | | | |||| || ||| | || | |||||| | | |||| Sbjct 13944 GCCCATT---TAAAGAATAGACCTGATCCAGAAATCGTGCAAAGAATTATTGTTGAAGCT 13888 Query 269354 GTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAAT 269413 ||| || | |||| |||| | | || || ||| || | | | | | |||||||| Sbjct 13887 GTTGCTATTGAAAAGGAATATTTCACTGATGCTTTACCAGTTAGTTTGTTAGGTATGAAC 13828 Query 269414 AGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGG 269473 || ||| ||||| || |||| ||| |||||||||| |||| |||| || Sbjct 13827 TCGGGATTAATGTGTCAATATGTTGAGTTTGTAGCTGATAGATTATTGGTTGCTTTTGG- 13769 Query 269474 TTTAGTAAAAA---ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTA 269530 || ||| || |||||| || ||||| ||| ||| ||||||||||| || ||| Sbjct 13768 --TAATAAGAAGGTATATAATGTAACTAATCCATTTGATTTCATGGAGAATATTTCCTTA 13711 Query 269531 GAAGGTAAGGCTAATTTCTTCGAGAAG 269557 | || ||| |||||||||| || ||| Sbjct 13710 GCTGGGAAGACTAATTTCTTTGAAAAG 13684 >seq1836 Length=79629 Score = 168 bits (186), Expect = 2e-36 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 104327 TTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTAT 104384 |||||| || ||||| | || | || | ||||| |||||||| || || ||||| | Sbjct 56883 TTTATTGACCACCTCTCAATCTTAAAACCAAGTGTAAAGTAGATTCCTTTTGGATATTGT 56942 Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 | ||||||| ||||||||||||||||| ||| || ||||||||||||| || ||||| | Sbjct 56943 AATCAGATAAAGTTCTACCGTCTTCTAATTGCTTACCAGCAAAAATTAATCTTTGTTGGT 57002 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 |||| || || ||||| || || || ||||| | ||| ||||| || | ||| || || Sbjct 57003 CAGGTGGAATACCTTCCTTGTCTTGGATCTTAGATTTAACATTGTCAATGGTGTCAGAAG 57062 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || |||| ||||||||||||||||| | || || || || || ||||| Sbjct 57063 ATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 57117 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || ||||| || || || || |||||||||| ||||||||||||||||| || Sbjct 57143 TGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCTAACTGC 57202 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| | || ||||| || || || || ||||| || || || || || Sbjct 57203 TTACCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATTTTG 57262 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | || || || ||| || |||| ||||||||||||||||| Sbjct 57263 GACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTT 57322 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||| Sbjct 57323 AAAGTCTTAACGAAGATTTGCAT 57345 >seq221 Length=38424 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | |||||| ||||||||||| || ||||| || ||| | Sbjct 37654 CCACCTCTTAATCTCAAAACCAAATGTAAAGTAGATTCTTTTTGGATATTGTAATCACTT 37713 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||| ||||| | |||||| |||||||| |||| || ||||||||||| || Sbjct 37714 AAGGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 37773 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| |||||||| | ||| ||||| || | ||| ||| | ||| || Sbjct 37774 ATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATGGTGTCGGAGGATTCGACT 37833 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | ||||| ||||||||||| | || || || || || ||||||||| Sbjct 37834 TCCAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAAATTTGCATTTTG 37884 >seq481 Length=384 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || ||||| || || || || |||||||||| ||||||||||||||||| || Sbjct 6 TGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCTAACTGC 65 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| | || ||||| ||||| || || ||||| || || || || || Sbjct 66 TTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTTTG 125 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | || || || ||| || |||| ||||||||||||||||| Sbjct 126 GACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTT 185 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||| Sbjct 186 AAAGTCTTAACGAAGATTTGCAT 208 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || ||||| || || || || |||||||||| ||||||||||||||||| || Sbjct 234 TGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCTAACTGC 293 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || || |||||||| | || ||||| ||||| || || ||||| || || || || || Sbjct 294 TTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTTT 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151363289545040