Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03]
2,380 sequences; 14,809,507 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq1221 232 8e-56
seq2047 168 8e-37
>seq1221
Length=135038
Score = 232 bits (256), Expect = 8e-56
Identities = 340/485 (70%), Gaps = 32/485 (7%)
Strand=Plus/Minus
Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860
|| ||| |||||||||| || ||||| |||||||| ||||||| ||||||||| || |
Sbjct 41097 TCTAGTAAATTGTTCTTGTAAAGCTTCAATATGATCCAAATAAACATGAGCATCACCCAA 41038
Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920
|||||||||||||| || | |||||| || |||||||| | | ||||||||
Sbjct 41037 AGTATGAATAAATTCTCCACAATCCATATCTACTATATGAGCAATCATCTTAGTTAATAA 40978
Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980
||||| ||||| | || || ||||| || || |||||||| ||| || || || |
Sbjct 40977 AGCATATGAAGCAATGTTGAATGGTACCCCCAAGCCCATATCACATGACCTCTGGTATAA 40918
Query 6981 TTGACAAGATAA---------------AATATTGTCTATAG---------------CATA 7010
| || ||||| | ||| |||| | ||||
Sbjct 40917 TAAGCAGGATAATTTTGGTCTAACTGAAGTATCGTCTTTGTTTTCTGGGAAATTTACATA 40858
Query 7011 AAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCA 7070
||||||||| || |||||||| || |||||| | | | | ||||| |||||||||
Sbjct 40857 AAATTGACAGAAAACATGACAAGGTGGTAAAGCCATTTTTTTAAAATCAGGTGGATTCCA 40798
Query 7071 AGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG 7130
|||| ||| | ||| | | ||||| ||||||||| ||||||||| | |||| || ||
Sbjct 40797 TGCAGACATAATAATTCTACGATCATATGGATTTGTCTTTAATTTTTTAATAAC-ATCTG 40739
Query 7131 TAAT-TGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAA 7189
|| ||||| | |||||||| ||| | | ||| ||||| || ||| | ||||| |
Sbjct 40738 CAAGCTGATCAAACCCCTGACCAGTATAGTCACTATCACAATCTAGATATTCGGCTCCGA 40679
Query 7190 AATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATC 7249
||||||||||||| || ||||||| || |||||||||||||| ||||||| | ||||
Sbjct 40678 AATGTCTCCATTGGAATCCATAAACTGGTCCTAAATCACCTTCACGACGATGAGTTAATC 40619
Query 7250 CTAAT 7254
| |||
Sbjct 40618 CCAAT 40614
>seq2047
Length=190326
Score = 168 bits (186), Expect = 8e-37
Identities = 389/578 (67%), Gaps = 31/578 (5%)
Strand=Plus/Minus
Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457
|| || ||||| | ||| | ||||| ||||| |||||| |||||||||| ||
Sbjct 115029 AAATTGGAAGATTTAGGAATCGGTGGGTTAGATGCCGAATTTCAAGATATTTTCAGAAGA 114970
Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517
|||||| ||| ||| | ||| || || ||||||| | | |||||||
Sbjct 114969 GCATTTAATTCAAGAATCTTACCTCCTGATATTGCTGAAAAATTGGATTATAAACATTGT 114910
Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577
||||| | |||||| ||| ||||| ||| |||||||| || || ||||| | |||
Sbjct 114909 AAAGGTTTATTATTATTTGGTCCTCCAGGTACTGGTAAAACTTTGATTGCTCG-TAAATT 114851
Query 164578 G-CTCAAGCTTTTAAATCGC--GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAAC 164634
|| || |||| | || || ||||||||||||||||||||| | || |
Sbjct 114850 ATCTAAAATGCTTAACGGGAAAGAACCA--AAAATTGTTAATGGTCCTGAAATGTTAAGT 114793
Query 164635 AAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAA 164694
|||||||| |||| ||||||| ||| || | || || ||| | || || |||| |||
Sbjct 114792 AAATATGTTGGTGCTTCAGAAGAAAATATTCGTAATTTATTTAAAGATGCCGAAGCTGAA 114733
Query 164695 CA-AAAGAAA---GC-AGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749
| ||| ||| || ||| || || | |||||||||||| | |||||||| |||
Sbjct 114732 TATAAACAAAAGGGCGAGGATT---CAG--ATTTACATGTTATTATATTTGATGAATTAG 114678
Query 164750 ATGCTCTTTGCAAAAAACGTGGT-------GATAATAT--------TATTCATGATGCAG 164794
|| || ||| |||| || | ||| ||| | || | || |||| |
Sbjct 114677 ATTCTGTTTTCAAACAAAGAGGTTCAGCCAGATCAGATGGTACAGGTGTTGGTGATAATG 114618
Query 164795 TGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTG 164854
| |||||||| || | || ||||| |||||||| || ||||||||||| || |
Sbjct 114617 TTGTTAATCAATTATTGTCGAAAATGGATGGTGTGGATCAGTTAAATAATATCTTGGTCA 114558
Query 164855 TAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAG 164914
| |||||||| || || |||||||||||| || || ||| |||| ||| |||| |
Sbjct 114557 TTGGTATGACTAATAGATTAGATTTAATTGATACGGCATTGTTAAGACCAGGTAGATTTG 114498
Query 164915 AATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGA 164952
|| | |||| ||||| | | | || ||| || | |||
Sbjct 114497 AAATTCAAATTGAAATTGCACTTCCTGACGAAAAGGGA 114460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595854272808000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |