Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1221 232 8e-56 seq2047 168 8e-37 >seq1221 Length=135038 Score = 232 bits (256), Expect = 8e-56 Identities = 340/485 (70%), Gaps = 32/485 (7%) Strand=Plus/Minus Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 || ||| |||||||||| || ||||| |||||||| ||||||| ||||||||| || | Sbjct 41097 TCTAGTAAATTGTTCTTGTAAAGCTTCAATATGATCCAAATAAACATGAGCATCACCCAA 41038 Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920 |||||||||||||| || | |||||| || |||||||| | | |||||||| Sbjct 41037 AGTATGAATAAATTCTCCACAATCCATATCTACTATATGAGCAATCATCTTAGTTAATAA 40978 Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980 ||||| ||||| | || || ||||| || || |||||||| ||| || || || | Sbjct 40977 AGCATATGAAGCAATGTTGAATGGTACCCCCAAGCCCATATCACATGACCTCTGGTATAA 40918 Query 6981 TTGACAAGATAA---------------AATATTGTCTATAG---------------CATA 7010 | || ||||| | ||| |||| | |||| Sbjct 40917 TAAGCAGGATAATTTTGGTCTAACTGAAGTATCGTCTTTGTTTTCTGGGAAATTTACATA 40858 Query 7011 AAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCA 7070 ||||||||| || |||||||| || |||||| | | | | ||||| ||||||||| Sbjct 40857 AAATTGACAGAAAACATGACAAGGTGGTAAAGCCATTTTTTTAAAATCAGGTGGATTCCA 40798 Query 7071 AGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG 7130 |||| ||| | ||| | | ||||| ||||||||| ||||||||| | |||| || || Sbjct 40797 TGCAGACATAATAATTCTACGATCATATGGATTTGTCTTTAATTTTTTAATAAC-ATCTG 40739 Query 7131 TAAT-TGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAA 7189 || ||||| | |||||||| ||| | | ||| ||||| || ||| | ||||| | Sbjct 40738 CAAGCTGATCAAACCCCTGACCAGTATAGTCACTATCACAATCTAGATATTCGGCTCCGA 40679 Query 7190 AATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATC 7249 ||||||||||||| || ||||||| || |||||||||||||| ||||||| | |||| Sbjct 40678 AATGTCTCCATTGGAATCCATAAACTGGTCCTAAATCACCTTCACGACGATGAGTTAATC 40619 Query 7250 CTAAT 7254 | ||| Sbjct 40618 CCAAT 40614 >seq2047 Length=190326 Score = 168 bits (186), Expect = 8e-37 Identities = 389/578 (67%), Gaps = 31/578 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || || ||||| | ||| | ||||| ||||| |||||| |||||||||| || Sbjct 115029 AAATTGGAAGATTTAGGAATCGGTGGGTTAGATGCCGAATTTCAAGATATTTTCAGAAGA 114970 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517 |||||| ||| ||| | ||| || || ||||||| | | ||||||| Sbjct 114969 GCATTTAATTCAAGAATCTTACCTCCTGATATTGCTGAAAAATTGGATTATAAACATTGT 114910 Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577 ||||| | |||||| ||| ||||| ||| |||||||| || || ||||| | ||| Sbjct 114909 AAAGGTTTATTATTATTTGGTCCTCCAGGTACTGGTAAAACTTTGATTGCTCG-TAAATT 114851 Query 164578 G-CTCAAGCTTTTAAATCGC--GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAAC 164634 || || |||| | || || ||||||||||||||||||||| | || | Sbjct 114850 ATCTAAAATGCTTAACGGGAAAGAACCA--AAAATTGTTAATGGTCCTGAAATGTTAAGT 114793 Query 164635 AAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAA 164694 |||||||| |||| ||||||| ||| || | || || ||| | || || |||| ||| Sbjct 114792 AAATATGTTGGTGCTTCAGAAGAAAATATTCGTAATTTATTTAAAGATGCCGAAGCTGAA 114733 Query 164695 CA-AAAGAAA---GC-AGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749 | ||| ||| || ||| || || | |||||||||||| | |||||||| ||| Sbjct 114732 TATAAACAAAAGGGCGAGGATT---CAG--ATTTACATGTTATTATATTTGATGAATTAG 114678 Query 164750 ATGCTCTTTGCAAAAAACGTGGT-------GATAATAT--------TATTCATGATGCAG 164794 || || ||| |||| || | ||| ||| | || | || |||| | Sbjct 114677 ATTCTGTTTTCAAACAAAGAGGTTCAGCCAGATCAGATGGTACAGGTGTTGGTGATAATG 114618 Query 164795 TGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTG 164854 | |||||||| || | || ||||| |||||||| || ||||||||||| || | Sbjct 114617 TTGTTAATCAATTATTGTCGAAAATGGATGGTGTGGATCAGTTAAATAATATCTTGGTCA 114558 Query 164855 TAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAG 164914 | |||||||| || || |||||||||||| || || ||| |||| ||| |||| | Sbjct 114557 TTGGTATGACTAATAGATTAGATTTAATTGATACGGCATTGTTAAGACCAGGTAGATTTG 114498 Query 164915 AATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGA 164952 || | |||| ||||| | | | || ||| || | ||| Sbjct 114497 AAATTCAAATTGAAATTGCACTTCCTGACGAAAAGGGA 114460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595854272808000