Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq333 298 6e-76 >seq333 Length=169781 Score = 298 bits (330), Expect = 6e-76 Identities = 596/884 (67%), Gaps = 11/884 (1%) Strand=Plus/Plus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||||||||| |||||| ||||| || ||||| ||||| || | || || ||| | Sbjct 13665 TTTGATAATCGGAAACTCTCTTTTCAAAGAAATTAGTCTTCCCAGCTAAGGAAATATTCT 13724 Query 21246 CCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||| |||||||||||||| | | ||| | ||| || ||| ||| | | ||| Sbjct 13725 CCATGAAATCAAATGGATTAGTTACATT-ATATACCTTCTTATTACCAAAAGCAACCAAT 13783 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 |||||||| |||||||| || | |||||||||||||||| | | |||||||| | ||| Sbjct 13784 AATCTATCAGCTACAAACTCAACATATTGACACATTAATCCCGAGTTCATACCTAACAAA 13843 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 | || || | ||| | || ||| | ||||| |||| || ||||||||||| || Sbjct 13844 CTAACTGGTAAAGCATCAGTGAAATATTCCTTTTCAATAGCAACAGCTTCAACAATAATT 13903 Query 21425 TTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAA 21484 || | | || | ||| || | ||| || ||| | || ||| |||||| Sbjct 13904 CTTTGCACGATTTCTGGATCAGGTCTATTCTTTAAATGGGCAAATAACATACAAGCAAAA 13963 Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544 ||| ||| || |||||||| || |||||||||||||| || ||||| || |||||| Sbjct 13964 TCAGTATGTAATCCTTCATCTCTTGAAATTAATTCATTAGAGAAAGTTAATCCTGGCATT 14023 Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCA 21604 |||||||| || |||||||| || || || ||||| | ||| ||||||||| || ||| Sbjct 14024 AATCCTCTTTTCTTTAACCAGAAAATCGAAGCAAAGGATCCACTAAAGAAAATACCTTCA 14083 Query 21605 ACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTT 21664 | |||||||| |||||||||| |||| | ||| | || ||||| |||||||| Sbjct 14084 ATAGCAGCAAAGGCAACTAATCTTTCAGCATATAAGGCATCCTTATCGGCGATCCATTTC 14143 Query 21665 TCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTT---TTAAAAGA 21721 ||||| || ||||| | |||||| ||| |||| ||| || | ||||| Sbjct 14144 AAAGCCCAGTTGGCCTTCTTGGCAATACATGGAATAGTATGAATTGCATCAAATAAAAAT 14203 Query 21722 TGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAA 21781 | | || || | ||| | | | ||| | ||||||| Sbjct 14204 TCAGCTTCTTGA---GGATCCTTAACATAAGTATCTATCAAAAGAGAATAAACTTCAGAA 14260 Query 21782 TGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACC 21841 || || |||| ||| || || || || || || | | || || | | |||||| Sbjct 14261 TGAATCATTTCAATCATGATTTGGAAACCATAGAATGCTTTAGCTTCAGGAACTTGAACT 14320 Query 21842 TCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAAT 21901 || | | | || || | || |||||||| ||||| |||||| || ||||| || Sbjct 14321 TCAGCACAGAAATTTTCCACTAAATTTTCATTAACTATACCATCAGAAGCAGCAAAGAAG 14380 Query 21902 GCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT---TTTTTCCAATCTAAT 21958 || |||| || ||||| ||||| ||||| | ||| || |||||||| | Sbjct 14381 GCTAATACTCGGGAAATGAAATAACGTTCATTATCATTCAATCTATTGTTCCAATCGTGT 14440 Query 21959 AAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATAC 22018 ||||| || |||||| | |||||||| ||||| || ||| ||| ||||||||| Sbjct 14441 AAATCCTTACTTAAATCGATTTCTTCAGCGGTCCAGAATGAAGCTTCAGCTTTTTTATAC 14500 Query 22019 ATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062 || ||| || |||| |||| | ||||| ||||| ||||| || Sbjct 14501 ATTTGCCATATTTCATGATATCTAATTGGGAATATAACAAATCT 14544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531884975951200