Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03]
2,380 sequences; 14,809,507 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1916 140 2e-28
seq1894 140 2e-28
seq1836 125 5e-24
seq1731 104 2e-17
seq1730 104 2e-17
seq481 100 2e-16
seq221 93.3 3e-14
>seq1916
Length=1024
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 532 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 591
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 592 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 626
>seq1894
Length=1064
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 532 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 591
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 592 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 626
>seq1836
Length=79629
Score = 125 bits (138), Expect = 5e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| ||||| || | |||| |||||||| || ||||| ||||
Sbjct 57117 TACCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 57176
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| ||| | |||| ||||| || || |||||||| || | | |||||| || | |
Sbjct 57177 ATAAAGTTCTACCGTCTTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCTGGTG 57236
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| ||||| ||||| ||| || || | | ||| || | |||||
Sbjct 57237 GAATACCTTCCTTGTCTTGGATTTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAA 57296
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| |||||||| ||||| || || || || ||||| || |||||
Sbjct 57297 CTTCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 57345
Score = 118 bits (130), Expect = 7e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | || ||||| || | ||| |||||||| ||||||||||||||
Sbjct 56890 ACCACCTCTCAATCTTAAAACCAAGTGTAAAGTAGATTCCTTTTGGATATTGTAATCAGA 56949
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| | |||| |||||||| || || ||||| |||| | |||||| || | ||
Sbjct 56950 TAAAGTTCTACCGTCTTCTAATTGCTTACCAGCAAAAATTAATCTTTGTTGGTCAGGTGG 57009
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| || || || ||||| | | || || | ||||||
Sbjct 57010 AATACCTTCCTTGTCTTGGATCTTAGATTTAACATTGTCAATGGTGTCAGAAGATTCAAC 57069
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||| |||||||| ||||| || || || || ||||| || |||||
Sbjct 57070 TTCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 57117
>seq1731
Length=1946
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 1250 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 1191
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 1190 GCCAATATTTAGCTTTA 1174
>seq1730
Length=1943
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 694 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 753
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 754 GCCAATATTTAGCTTTA 770
>seq481
Length=384
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 38110 CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTA 38169
|||| || | |||| |||||||| || ||||| ||||| ||| | |||| ||||
Sbjct 1 CCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCTA 60
Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229
| || || |||||||| || | | |||||| || | || | ||||| ||||| |
Sbjct 61 ACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGA 120
Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289
|||| ||| || || | | ||| || | |||||||||||| |||||||| ||||
Sbjct 121 TTTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTAC 180
Query 38290 CCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || ||||| || |||||
Sbjct 181 CAGTTAAAGTCTTAACGAAGATTTGCAT 208
Score = 84.2 bits (92), Expect = 1e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| ||||| || | |||| |||||||| || ||||| ||||
Sbjct 208 TACCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 267
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| ||| | |||| ||||| || || |||||||| || | | |||||| || | |
Sbjct 268 ATAAAGTTCTACCGTCTTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGTG 327
Query 38209 GGACGCCTTCTTTGTC 38224
| | ||||| |||||
Sbjct 328 GAATACCTTCCTTGTC 343
>seq221
Length=38424
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||||||||| || | ||| |||||||| | ||| || ||||| ||||||||||||
Sbjct 37653 ACCACCTCTTAATCTCAAAACCAAATGTAAAGTAGATTCTTTTTGGATATTGTAATCACT 37712
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| | | || || |||||||| || ||||| |||| | ||||||||| | ||
Sbjct 37713 TAAGGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 37772
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| || || ||| || || ||||| | | || || ||| ||
Sbjct 37773 AATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATGGTGTCGGAGGATTCGAC 37832
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| || ||||| || ||||| || ||||| || ||||| || ||||| ||
Sbjct 37833 TTCCAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAAATTTGCATTTT 37883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334937484437780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |