Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1836 129 5e-25 seq481 129 5e-25 seq221 129 5e-25 >seq1836 Length=79629 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| || ||||| | || || | ||||| || || ||| Sbjct 57117 ATGCAAATCTTCGTTAAGACTTTAACTGGTAAGACTATTACCTTAGAAGTTGAATCTTCT 57058 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || || || ||| ||||| ||||| ||||||||||||| Sbjct 57057 GACACCATTGA--CAATGTTAAATCTAAGATCCAAGACAAGGAAGGTATTCCACCTGACC 57000 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | |||||||| || || ||||||||||| | | | ||| | ||||||| Sbjct 56999 AACAAAGATTAATTTTTGCTGGTAAGCAATTAGAAGACGGTAGAACTTTATCTGATTACA 56940 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||| ||||| || |||| || || |||| | ||||| || Sbjct 56939 ATATCCAAAAGGAATCTACTTTACACTTGGTTTTAAGATTGAGAGGTGG 56891 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| || ||||| | || || | ||||| || || ||| Sbjct 57345 ATGCAAATCTTCGTTAAGACTTTAACTGGTAAGACTATTACCTTAGAAGTTGAATCTTCT 57286 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| |||||| ||||| ||||| |||||||| |||||| Sbjct 57285 GACACTATTGACAACGTCAAGTCCAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAA 57226 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||||||||| || || |||||||| | | | ||| | || ||||| Sbjct 57225 CAAAGATTGATTTTTGCCGGTAAGCAGTTAGAAGACGGTAGAACTTTATCTGACTACAAC 57166 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| |||| || || | || | ||||| || Sbjct 57165 ATCCAAAAGGAATCCACTTTACACTTGGTTTTGAGATTGAGAGGTGG 57119 >seq481 Length=384 Score = 129 bits (142), Expect = 5e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| || ||||| | || || | ||||| || || ||| Sbjct 208 ATGCAAATCTTCGTTAAGACTTTAACTGGTAAGACTATTACCTTAGAAGTTGAATCTTCT 149 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| |||||| ||||| ||||| ||||||||||||||| Sbjct 148 GACACTATTGACAACGTCAAGTCCAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAA 89 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||||||||| || || |||||||| | | | ||| | || ||||| Sbjct 88 CAAAGATTGATTTTTGCCGGTAAGCAGTTAGAAGACGGTAGAACTTTATCTGACTACAAC 29 Query 25179 ATTCAAAAAGAATCCACGCTACATTT 25204 || ||||| |||||||| |||| || Sbjct 28 ATCCAAAAGGAATCCACTTTACACTT 3 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || ||||||||||| || | ||| |||||| ||||| ||||| ||||||||| Sbjct 382 TCTTCTGACACTATTGACAACGTCAAGTCCAAAATCCAAGACAAGGAAGGTATTCCACCT 323 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 |||||||| | | ||||||||||| || || |||||||| | | | ||| | || Sbjct 322 GACCAACAAAGATTGATTTTTGCCGGTAAGCAGTTAGAAGACGGTAGAACTTTATCTGAC 263 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||| |||||||| |||| || || | || | ||||| || Sbjct 262 TACAACATCCAAAAGGAATCCACTTTACACTTGGTTTTGAGATTGAGAGGTGG 210 >seq221 Length=38424 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| || || ||||| |||| || | ||||| || || || Sbjct 37881 AATGCAAATTTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTGGAAGTCGAATCCTC 37822 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || |||| || | || | ||| || || ||||| |||||||||| Sbjct 37821 CGACACCATTGATAATGTCA---AATCCAAGATTCAA-GATAAGGAAGGTATTCCACCTG 37766 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| | | || ||||| || |||||||| ||||||| | | || | | |||| Sbjct 37765 ATCAACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACCTTAAGTGATT 37706 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| ||||||||||| || ||||||| || | || ||||||| || Sbjct 37705 ACAATATCCAAAAAGAATCTACTTTACATTTGGTTTTGAGATTAAGAGGTGG 37654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433315430779700