Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq221 95.1 9e-15 seq1836 91.5 1e-13 seq481 91.5 1e-13 >seq221 Length=38424 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| | ||| |||||||||| || |||||||| |||||||||||| | Sbjct 37654 CCACCTCTTAATCTCAAAACCAAATGTAAAGTAGATTCTTTTTGGATATTGTAATCACTT 37713 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | | || ||||| || ||||| ||||| || | || |||||||| | ||| Sbjct 37714 AAGGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 37773 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || |||||| ||| ||| | | | | || || | || || Sbjct 37774 ATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATGGTGTCGGAGGATTCGACT 37833 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || || || || || ||||| ||||| Sbjct 37834 TCCAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAAATTTGCAT 37880 >seq1836 Length=79629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| ||||| |||| ||| || ||||| || ||||| ||||||| | ||| | |||| Sbjct 57133 CAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTC 57192 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || ||||||||||||||||| |||| || ||||| || | |||| || |||||||| Sbjct 57193 TTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTC 57252 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || ||||| |||| || || ||||| |||||||||||||||| | ||| | |||| Sbjct 56906 AAAACCAAGTGTAAAGTAGATTCCTTTTGGATATTGTAATCAGATAAAGTTCTACCGTCT 56965 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || |||||||| ||||| || | || ||||| || | |||| || |||||||| Sbjct 56966 TCTAATTGCTTACCAGCAAAAATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCT 57025 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||||| ||| ||| | | | || || | || || || | ||||| || Sbjct 57026 TGGATCTTAGATTTAACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTC 57085 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || || || ||||| Sbjct 57086 TTACCAGTTAAAGTCTTAACGAAGATTTGCAT 57117 >seq481 Length=384 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| ||||| |||| ||| || ||||| || ||||| ||||||| | ||| | |||| Sbjct 224 CAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTC 283 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || ||||||||||||||||| |||| || ||||| || | |||| || |||||||| Sbjct 284 TTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTC 343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48559 CCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCA 48618 |||| |||| ||| || ||||| || ||||| ||||||| | ||| | |||| || | Sbjct 1 CCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCTA 60 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||||||||||||||| |||| || ||||| || | |||| || |||||||| Sbjct 61 ACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTC 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380926550428740