Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq333 239 9e-58 seq221 201 2e-46 seq1836 168 1e-36 seq481 123 5e-23 >seq333 Length=169781 Score = 239 bits (264), Expect = 9e-58 Identities = 568/857 (66%), Gaps = 20/857 (2%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAATA 49650 ||| |||||||||||||| | |||||| || || | || ||| | || |||| Sbjct 13726 CATGAAATCAAATGGATTAGTTACATTATA-TACCTTCTTATTACCAAAAGCAACCAATA 13784 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 ||||||| |||||||| ||||||||||| |||||||| | | |||||||| || || Sbjct 13785 ATCTATCAGCTACAAACTCAACATATTGACACATTAATCCCGAGTTCATACCTAACAAAC 13844 Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770 ||| |||||| |||||| | | |||| ||||| || | ||||||| ||| || Sbjct 13845 TAACTGGTAAAGCATCAGTGAAATATTCCTTTTCAATAGCAACAGCTTCAACAATAATTC 13904 Query 49771 taattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAA 49830 | || | |||| | ||| | | |||| || || ||| ||| | ||| |||| Sbjct 13905 T--TTGCACGATTTCTGGATCAGGTCTATTCTTTAA-ATGGGCAAATAACATACAAGCAA 13961 Query 49831 AATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 49890 ||||||||||||| || || || || || || ||||||||| |||||||||||||||| Sbjct 13962 AATCAGTATGTAATCCTTCATCTCTTGAAATTAATTCATTAGAGAAAGTTAATCCTGGCA 14021 Query 49891 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 49950 |||||||||| || || | ||| || || || ||||| | | |||||| ||||| | Sbjct 14022 TTAATCCTCTTTTCTTTAACCAGAAAATCGAAGCAAAGGATCCACTAAAGAAAATACCTT 14081 Query 49951 CGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCTAATATCC 50007 | | | ||||| || | || |||| | || | ||| ||| ||| |||| Sbjct 14082 CAATAGCAGCAAAGGCAACTAATCTTTCAGCATA---TAAGGCATCCTTATCGGCGATCC 14138 Query 50008 AATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT- 50066 | || | |||||| | || || || ||| | || ||| | | || || | |||| Sbjct 14139 ATTTCAAAGCCCAGTTGGCCTTCTTGGCAATACATGGAATAGTATGAATTGCATCAAATA 14198 Query 50067 --AATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 |||||| || || | || || | |||||| | || Sbjct 14199 AAAATTCAGCTTCTTGA---GGATCCTTAACATAAGTATCTATCAAAAGAGAATAAACTT 14255 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACT 50184 ||||||| | ||| || ||||| || ||| ||| | | ||||| | | | Sbjct 14256 CAGAATGAATCATTTCAATCATGATTTGGAAACCATAGAATGCTTTAGCTTCAGGAACTT 14315 Query 50185 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 50244 ||||||| | | |||| ||| |||||||| ||| || ||||||||||| || || | Sbjct 14316 GAACTTCAGCACAGAAATTTTCCACTAAATTTTCATTAACTATACCATCAGAAGCAGCAA 14375 Query 50245 AGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA---ATTTTCCCAAG 50301 |||| ||||| || ||| |||| ||||||||| || || ||| | |||| Sbjct 14376 AGAAGGCTAATACTCGGGAAATGAAATAACGTTCATTATCATTCAATCTATTGTTCCAAT 14435 Query 50302 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 | | ||| || |||||| | |||||| ||||| ||||| ||| | | ||||| Sbjct 14436 CGTGTAAATCCTTACTTAAATCGATTTCTTCAGCGGTCCAGAATGAAGCTTCAGCTTTTT 14495 Query 50362 TATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTAtttt 50421 |||||||||| |||| ||| || | ||| || |||| ||| ||| | | | ||| | Sbjct 14496 TATACATTTGCCATATTTCATGATATCTAATTGGGAATATAACAAATCTTCTTGCATTCT 14555 Query 50422 tttCTAATATCGGTTCT 50438 | |||| |||||| Sbjct 14556 CCTTCAATAATGGTTCT 14572 >seq221 Length=38424 Score = 201 bits (222), Expect = 2e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || ||||||||||||| ||||| |||||| |||||| Sbjct 37653 ACCACCTCTTAATCTCAAAACCAAATGTAAAGTAGATTCTTTTTGGATATTGTAATCACT 37712 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 37713 TAAGGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 37772 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| || || ||| |||||| || | || || ||||| || Sbjct 37773 AATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATGGTGTCGGAGGATTCGAC 37832 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | ||||||||| ||||||||||| || |||| || || |||||||| Sbjct 37833 TTCCAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAAATTTGCATTTT 37883 >seq1836 Length=79629 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | ||| || || |||||||||| || || |||||| |||||||| Sbjct 56890 ACCACCTCTCAATCTTAAAACCAAGTGTAAAGTAGATTCCTTTTGGATATTGTAATCAGA 56949 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| | || || ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 56950 TAAAGTTCTACCGTCTTCTAATTGCTTACCAGCAAAAATTAATCTTTGTTGGTCAGGTGG 57009 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || ||| ||| ||||| || | || || ||||| || Sbjct 57010 AATACCTTCCTTGTCTTGGATCTTAGATTTAACATTGTCAATGGTGTCAGAAGATTCAAC 57069 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || ||||||||||| || |||| || || ||||| Sbjct 57070 TTCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 57117 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || |||||||| | || || ||| || || ||| Sbjct 57116 ATACCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 57175 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | || || || || ||||| ||||| || ||||| ||||| || ||| Sbjct 57176 GATAAAGTTCTACCGTCTTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCTGGT 57235 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| || || || |||| || || ||||| Sbjct 57236 GGAATACCTTCCTTGTCTTGGATTTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCA 57295 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| || ||||||||||| || |||| || || ||||| Sbjct 57296 ACTTCTAAGGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 57345 >seq481 Length=384 Score = 123 bits (136), Expect = 5e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192331 AAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAAT 192390 || |||||||| | || || ||| || || |||||||| |||| | || || || Sbjct 3 AAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCTAAC 62 Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 || ||||| ||||| || ||||| ||||| |||||||| || ||||| || ||||| ||| Sbjct 63 TGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATT 122 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 || || || || |||| || || ||||| ||||||| ||||| || |||||| Sbjct 123 TTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCA 182 Query 192511 GTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || |||| || || ||||| Sbjct 183 GTTAAAGTCTTAACGAAGATTTGCAT 208 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || |||||||| | || || ||| || || ||| Sbjct 207 ATACCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 266 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | || || || || ||||| ||||| || ||||| ||||| |||||| Sbjct 267 GATAAAGTTCTACCGTCTTCTAACTGCTTACCGGCAAAAATCAATCTTTGTTGGTCAGGT 326 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || ||||| || ||||| ||||| Sbjct 327 GGAATACCTTCCTTGTCTTGGATTTT 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984449979513000