Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1221 147 3e-30 seq1913 84.2 3e-11 seq88 84.2 3e-11 >seq1221 Length=135038 Score = 147 bits (162), Expect = 3e-30 Identities = 201/281 (72%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 168459 TTTGATTTAAGTGGTGGAACTATCCCACTTCTTACTACCaaaaaaaTTGTATACACTAAC 168518 |||||||| | || ||| |||||||| | || ||||||| | || | | || Sbjct 40444 TTTGATTTGTCTAATGATACTTTCCCACTTTTAACCACCAAAAGAGTTTTCTCCAAGGGT 40503 Query 168519 ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGAT 168578 || || | |||||||||||| || | ||||| |||||| | |||| ||||| ||| Sbjct 40504 ATAATTCATGAACTTTTATGGTTTGTTTCTGGTTCCACTGATGCTAAACTATTAAGTGAC 40563 Query 168579 ATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTT 168638 | ||||||||| | ||| | | || ||||| ||||||||||| ||| || || || Sbjct 40564 AAGGGTGTTAAAATCTGGGAGGGGAACGGTTCACGTGAATTTTTGGATAAATTGGGATTA 40623 Query 168639 ACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGA 168698 || | | |||||||||||||| ||| |||||||||| |||||||||||| ||| Sbjct 40624 ACTCATCGTCGTGAAGGTGATTTAGGACCAGTTTATGGATTCCAATGGAGACATTTCGGA 40683 Query 168699 GCTCAATATATTGACTGTGATACAGATTACACCGGACAAGG 168739 || ||||| | || ||||||| || || || || || || Sbjct 40684 GCCGAATATCTAGATTGTGATAGTGACTATACTGGTCAGGG 40724 >seq1913 Length=74342 Score = 84.2 bits (92), Expect = 3e-11 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCA 52036 |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 15910 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCCCA 15862 >seq88 Length=45284 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 51957 ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 52016 ||||||| | | || ||| | |||| | |||||||||||||||| |||||||||||| Sbjct 19304 ACATTTAGATTAAACTTGTCGGTGACGTCACCATATAATGCTGATTTCGATGGGGATGAA 19363 Query 52017 ATGAATTTACATGTTCCTCAATCA 52040 ||||||||||| || || |||||| Sbjct 19364 ATGAATTTACACGTGCCACAATCA 19387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635158703466400