Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq333 277 4e-69 seq1891 203 8e-47 seq1111 96.9 8e-15 seq88 91.5 3e-13 seq2080 87.8 4e-12 >seq333 Length=169781 Score = 277 bits (306), Expect = 4e-69 Identities = 586/865 (68%), Gaps = 11/865 (1%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 ||||||||||||||||||| | ||| | ||||||| | ||||| ||||| | | Sbjct 51251 ACTATTTTGGTTTCAAAACCTTGGAAAGATCTTATTTGTTACGTGTTAATGGTAAAGTTG 51192 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||| | |||||||| | || | | ||||| |||||||||||||| | |||||| Sbjct 51191 CTGAAAGACCTCAACATTTACTTATGAGAGTTGCTATTGGTATTCATGGTGAAGATATTC 51132 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 || ||||||| ||| || || | | |||| | || |||| | || | Sbjct 51131 CCCGAGTAATTGAATCATATAATTTAATGTCTCAAAAATACTTTACCCATGGGTCCCCCA 51072 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATT 110540 | |||| || || || ||| | |||| || |||| || |||||| | | || Sbjct 51071 CGTTATTCAATGCTGGTACTCCAAGTCCACAAATGTCTTCGTG-TTTCTTGGTTGCTATG 51013 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAA 110599 || || ||||| ||||| |||||||| || | ||||||| |||| | ||||| || Sbjct 51012 AAGGAAGATTCCATTGATGGTATTTACGACACG-TTAAAGACGTGTGCTTTAATTTCCAA 50954 Query 110600 AAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGC 110659 | |||| || ||||| | || ||||| |||| || | | || | |||| || Sbjct 50953 GAGTGCTGGTGGTATTGGGTTACATATTCATAATATCCGGGCCACTGGTTCTTATATTGC 50894 Query 110660 AACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | || ||| |||| | || || | || ||| | ||||| |||||| |||| || Sbjct 50893 TGGTACCAATGGTACTTCCAACGGTATTATCCCCATGGTTAGAGTTTTCAACAACACGGC 50834 Query 110720 AAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACC 110776 ||||| ||||||||||||| |||| || | ||||| | ||| | ||||| Sbjct 50833 TCGTTATGTTGATCAAGGTGGTAACAAGAGACCAGGAGCTTTTGCCCTTTATTTAGAACC 50774 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACA 110836 ||||||| | ||||| ||||| ||| | || || | |||||| || |||||| Sbjct 50773 TTGGCATGCGGATATTTTTGATTTCATTGATATTAGAAAAAATTCCGGTAAGGAAGAAAT 50714 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 ||||| | |||||||| || | |||||| | ||||||||||||||||| ||| | Sbjct 50713 TAGAGCTAGAGATTTATTCCCGGCGTTATGGATTCCGGATTTATTCATGAAACGAGTTGA 50654 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 | ||||||| ||| || | | | || || |||||||| || ||||||| || Sbjct 50653 ACAAAATGGAGAATGGACTTTGTTTTCACCAAATGAAGCTCCTGGTTTACCTGATGTTTA 50594 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAAC 111015 ||| | || |||||||| | || |||| |||||||| |||||| | | | | |||| Sbjct 50593 TGGTGATGAATTTGAAGAATTATATGAAAGATATGAAAGAGAAGGTCGTGGTACTAAAAC 50534 Query 111016 AAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 | || | |||||| || | |||| ||| | ||| | ||| |||||| || ||| Sbjct 50533 TA--TCAAGGCTCAAAAATTATGGTATTCTATCTTGGAAGCTCAAACTGAAACAGGTACT 50476 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 || | ||| || ||||| ||| | ||| ||||| ||||||| ||||||||| Sbjct 50475 CCATTTATGTTATATAAGGATGCTTGTAACAAAAAATCCAATCAAAAGAATTTAGGGGTT 50416 Query 111135 ATTAAGTCTAGTAATTTGTGCTGTG 111159 ||||| ||| |||||| || |||| Sbjct 50415 ATTAAATCTTCTAATTTATGTTGTG 50391 Score = 141 bits (156), Expect = 2e-28 Identities = 390/590 (66%), Gaps = 27/590 (5%) Strand=Plus/Minus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 |||| ||||||| | |||| || | | | |||||||| ||| ||| || | |||| Sbjct 14534 TATTCCCAATTAGATATCATGAAATATGGCAAATGTATAAAAAAGCTGAAGCTTCATTCT 14475 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGA 131552 |||| | |||||| |||||| | | || ||| | | |||||| || ||| | |||| Sbjct 14474 GGACCGCTGAAGAAATCGATTTAAGTAAGGATTTACACGATTGG-AACAATAGA--TTGA 14418 Query 131553 ATGAAAAAGA------TTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCA 131606 |||| || || ||| ||||| ||| | || ||||| || | |||||| | Sbjct 14417 ATGATAATGAACGTTATTTCATTTCCCGAGTATTAGCCTTCTTTGCTGCTTCTGATGGTA 14358 Query 131607 TTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACAT 131666 | |||| ||||||| | || |||||| | ||| || | ||||||||| | | Sbjct 14357 TAGTTAATGAAAATTTAGTGGAAAATTTCTGTGCTGAAGTTCAAGTTCCTGAAGCTAAAG 14298 Query 131667 CGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGA 131726 | ||||| || ||| | ||||| |||||| || | ||||| | |||| Sbjct 14297 CATTCTATGGTTTCCAAATCATGATTGAAATGATTCATTCTGAAGTTTATTCTCTTTTGA 14238 Query 131727 TTGAGAGTCTTGTTAAAAATG---AAGATGATAAAAATAAATTATTTGATGCTGTAAATA 131783 | || | | |||||| || |||| | | || | ||||||||||| | ||| Sbjct 14237 TAGATACTTATGTTAAGGATCCTCAAGAAGCTGAATTT---TTATTTGATGCAATTCATA 14181 Query 131784 AATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGAT---GATT 131840 |||| ||| ||||| || | |||||| | |||||||| ||| ||| Sbjct 14180 CTATTCCATGTATTGCCAAGAAGGCCAACTGGGCTTTGAAATGGATCGCCGATAAGGATG 14121 Query 131841 CCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAG 131900 || || | | || |||| | || || |||||| | |||||||||| |||||| Sbjct 14120 CC-TTA--TATGCTGAAAGATTAGTTGCCTTTGCTGCTATTGAAGGTATTTTCTTT---A 14067 Query 131901 GTGCTTTCTGTGCT---ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCAT 131957 ||| | || |||| || || ||| | ||||| | ||||| ||||| ||| | | | Sbjct 14066 GTGGATCCTTTGCTTCGATTTTCTGGTTAAAGAAAAGAGGATTAATGCCAGGATTAACTT 14007 Query 131958 TGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007 | || ||| |||| || || |||||||||| ||| |||||||| |||||| Sbjct 14006 TCTCTAATGAATTAATTTCAAGAGATGAAGGATTACATACTGATTTTGCT 13957 >seq1891 Length=76648 Score = 203 bits (224), Expect = 8e-47 Identities = 511/773 (66%), Gaps = 19/773 (2%) Strand=Plus/Minus Query 110369 TCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGT 110428 ||||||| | ||||||||||| ||||| || || |||||| ||||| || || | || Sbjct 37621 TCCTCAATATATGTTTCTTCGAGTTGCTATAGGAATTCATTTTGATGATCTTGAATCGGT 37562 Query 110429 TATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATT 110488 |||| ||||| | | |||| | ||| |||||| |||| || ||| Sbjct 37561 AGTTGAGACATATGACTTGATGTCCCAAAAATATCTTATACATGCTTCTCCCACGTTATA 37502 Query 110489 TAACGCAGGAACTAATGGAGGACAATT----GGCTTCTTGCTTTCTTCTAGGAATTAACG 110544 || | ||||| ||| ||||| | | || || || ||| ||| || || | Sbjct 37501 CAATTCCGGAAC----GGAATTCAATTATTTGTCGTCATGTTTCCTTTTAGCTATGAAGG 37446 Query 110545 ATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT 110604 | |||||||| || || || || | | ||| | || | || | || || ||| | Sbjct 37445 AAGATTCTATAGATGGAATCTACAAAACCCTTCATGAGGCAGCATTAATCTCGAAAGCAT 37386 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAG 110664 | || || || ||||| || | |||||||| | | || ||| || ||| ||| Sbjct 37385 CAGGGGGGATCGGTATACATATGCATGATATAAGGGCCAACGGAACATTTATTGCAGGTA 37326 Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 |||| || | ||| | ||| | ||||| |||||| | || || || | ||||| | | Sbjct 37325 CGAATGGAGTTTCCAACGGATTAGTTCCCATGTTACGTGTATTTAATAATACTGCCAGGT 37266 Query 110725 ATGTGAATCAAGG---TGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 |||| ||||||| |||||| ||| ||| | ||| | || ||| | |||||||||| Sbjct 37265 ATGTAGATCAAGGCGGTGGTAAAAGACCTGGGGCTTTTTCAATGTATATAGAACCTTGGC 37206 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 || | ||||| ||||| | |||||| | || || || || || ||| || || ||| Sbjct 37205 ATGCTGATATCTTTGATATTTTAGAAATGCGGAAGAACCACGGTAATGAGGAGCATAGAA 37146 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | | ||||| ||||||| | ||||| | ||||| || |||||||| ||| ||||| Sbjct 37145 CTAGAGATTTGTTTTATGGGTTATGGATACCTGATTTGTTTATGAAACGAGTTAAAGAAG 37086 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAA 110961 || ||| | | | | || || ||||||| || |||||| ||||| Sbjct 37085 ATAAAGACTGGAGTTTGTTTTCCCCCAATGAAGCTCCTGGGTTAAGTGATGTGTATGGGG 37026 Query 110962 AAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA--CAA-- 111017 | ||||||| || | || |||||||||||| | ||| | || ||| | | | Sbjct 37025 ACGAGTTTGTTGAATTGTATGAAAAATATGAACAGCAAG----GATTGGCATATTCTACG 36970 Query 111018 ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077 || ||||| | | ||||| ||| | ||||||||| |||||| || | ||| Sbjct 36969 GTTAAGGCTCATAAGTTATGGTTAGCAATATTAGAATCACAAACTGAAACGGGGATTCCA 36910 Query 111078 TATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGG 111130 ||||| | ||||||||| | |||| || |||||||||| ||||||||| Sbjct 36909 TATATGCTATATAAAGATGCTTGTAATATTAAGTCTAATCAAAAGAATTTAGG 36857 >seq1111 Length=330748 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/191 (73%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 305301 TTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATA 305360 |||| |||||| | || || ||||| |||| | | ||| | ||||| || | |||| Sbjct 201258 TTAT-AGACATATTAAAAACCATGATGTGGTTATTATGAATCGTCAACCTACATTACATA 201316 Query 305361 AAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTC---GATTAA 305417 | ||||||||||| ||||||||| |||||| |||| || || ||||| Sbjct 201317 AGGCGTCTATGATGGGTCATAAAGTTCGAGTATTGCCTGGGGAGAAGACTCTCAGATTAC 201376 Query 305418 ATGTAAGTGCTTGTAC---GCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGC 305474 || || |||| ||| | |||||||||| ||||||||||| |||||||||||||||| Sbjct 201377 AT-TA--TGCTAATACTGGGGCTTATAATGCTGATTTTGATGGGGATGAAATGAATATGC 201433 Query 305475 ATGTACCTCAA 305485 || | || ||| Sbjct 201434 ATTTCCCGCAA 201444 >seq88 Length=45284 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/159 (75%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||| ||| | ||||| ||| | ||||||||||| |||||| |||| ||| ||||| Sbjct 19233 TGTTTAATCGTCAACCTTCATTACATAAAATGTCCATGATGTGTCATCGAGTTAAAGT-- 19290 Query 305394 TAT-CTGGATTG-ACATTTCGATTAAA--TGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 ||| | ||| |||||| ||||||| ||| ||| || | || |||||||| ||| Sbjct 19291 TATGCCCTATTCTACATTTAGATTAAACTTGTCGGTGAC-GT-CACCATATAATGCTGAT 19348 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 || ||||| |||||||||||| | || || || |||||| Sbjct 19349 TTCGATGGGGATGAAATGAATTTACACGTGCCACAATCA 19387 >seq2080 Length=64058 Score = 87.8 bits (96), Expect = 4e-12 Identities = 345/528 (65%), Gaps = 20/528 (4%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCT-AAT-TATGATGTTCATCGTTCTATTC 279863 || |||||| |||| ||| | ||| || |||| ||| | |||| | | | ||||| | Sbjct 27617 GATTTTATTAATAAGGAATTAATC--TTATTCTCAATGTCTGATAATGTTAGATCTATCC 27560 Query 279864 C-TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAA 279922 | || || || | || || ||||| || | || || |||| |||||| || Sbjct 27559 CCTCGGTTCTTG-ACGGGTTAAAACCAGGTCAAAGAAAAGTTTTATTTGGTTGTTATAAG 27501 Query 279923 AGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCA 279982 |||||| | | |||||||| |||||||| || |||||||||||| ||| | || Sbjct 27500 AGAAAACTTCGACAGGAAATTAAAGTTGCTCAATTGGCAGGTTATGTTAGTGAAAACACA 27441 Query 279983 GGTTATCATCACGGTG---AAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGAT 280039 |||||||| || |||| || | | ||||| | ||| | |||||||| ||| || Sbjct 27440 GGTTATCACCATGGTGAACAATCCTTAATTCAA---ACAATTATTGGTCTTGCTCAAAAT 27384 Query 280040 TTTATGGCTTCAAACAACTTAAATCTGCTTTCA-CCAAATGGTCAATTTGGTTCTCGTAT 280098 || | | || || ||| | ||| | ||| | ||||||||| |||||||||||| Sbjct 27383 TTCGTTGGATCGAATAACATCAATAT-CTTAAAGCCAAATGGTTCCTTTGGTTCTCGTGC 27325 Query 280099 TCACAATGGAAAAGATCATGGTAGTGCTCGTTACA--TACATACATGTCTTTCAGATATT 280156 | ||| |||||| || | ||| | || | | || | | || | || ||| Sbjct 27324 TGCTGGTGGTAAAGATTATTCTGCTGCGAGATATATTTTCACAGAAATCAAT--GAAATT 27267 Query 280157 ACAAACA-AGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGG 280215 ||||| | | || || ||| ||| ||| || | | || | | | ||||||| Sbjct 27266 ACAAAAACAATTTTTAATCCATT-GGATGATCCATTATATACTTATGTTCAAGATGATGA 27208 Query 280216 TCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGC 280275 | | | || ||||| | ||| || || | || |||||| | || |||||||| Sbjct 27207 ACAAACAGTAGAGCCAACGTGGTATTTACCTGTTTTACCCATGATTTTGGTAAATGGTGC 27148 Query 280276 TCAAGGAATTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCC 280323 |||| |||||||| |||| || || |||||| |||||||| Sbjct 27147 CGAAGGTATTGGAACTGGTTGGTCAACCAATATCCCCTCATACAATCC 27100 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 278166 TTGCAATGCATCCTAAGGAAAACAAGTACACAGTTGAAATGATATTTGGGAATTTATTGA 278225 ||| |||||| |||||||||| | ||| | ||| | || ||||| |||||||| | Sbjct 29344 TTGAAATGCACACTAAGGAAAATATGTATATCCCAGAACTAATTTTTGGTAATTTATTAA 29285 Query 278226 CATCTACTAATTACAAGGAAGATGAAGAGCGACTCACAGGAGGCAAAAATGGATATGGGG 278285 | ||| | ||||| || || || || | | | || || || | |||||| ||||| | Sbjct 29284 CTTCTTCCAATTATAATGATGACGAGAAAAAAGTTACTGGTGGTAGAAATGGGTATGGTG 29225 Query 278286 CAAAGCTGACAAATATCTTCTCAAAATGCTTTGAAGTTGAAACTGTTGATAAAAAGACT 278344 | || | ||||| ||||||| |||||||||||||||| |||| ||| ||| Sbjct 29224 CTAAATTATGTAATATTTTCTCAACTGAATTTGAAGTTGAAACTGCTGATTTAAACACT 29166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186776609627180