Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq333 199 3e-46 seq2047 140 3e-28 >seq333 Length=169781 Score = 199 bits (220), Expect = 3e-46 Identities = 585/887 (66%), Gaps = 21/887 (2%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| | || |||||| ||||||||| |||||||||||||| |||||||| | Sbjct 14544 AGATTTGTTATATTCCCAATTAGATATCATGAAATATGGCAAATGTATAAAAAAGCTGAA 14485 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGAT--- 43812 || ||||| ||||| || |||||| | ||||| | ||| || ||| ||| |||||| Sbjct 14484 GCTTCATTCTGGACCGCTGAAGAAATCGATTTAAGTAAGGATTTA-CACGATTGGAACAA 14426 Query 43813 TGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 | ||| || | ||| |||| || || || || || || |||||||| Sbjct 14425 TAGATTGAATGATAATGAACGTTATTTCATTTCCCGAGTATTAGCCTTCTTTGCTGCTTC 14366 Query 43873 CGACGGGATAGTCAATGAAAATTTGGT-TAGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931 || || ||||| ||||||||||| || | | || || ||||||||| | || | Sbjct 14365 TGATGGTATAGTTAATGAAAATTTAGTGGAAAATTTCTGTGC-TGAAGTTCAAGTTCCTG 14307 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 |||| | || ||||| || ||||| || |||| |||||||| ||| | || Sbjct 14306 AAGCTAAAGCATTCTATGGTTTCCAAATCATGATTGAAATGATTCATTCTGAAGTTTATT 14247 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATGC 44049 |||| |||||||||| || | || ||| | | |||||| | || ||| |||| Sbjct 14246 CTCTTTTGATAGATACTTATGTTAAGGAT--CCTCAAGAAGCTGAATTTTTATTTGATGC 14189 Query 44050 GATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTC 44109 || | || | || ||| | || || ||||||| | |||||||| Sbjct 14188 AATTCATACTATTCCATGTATTGCCAAGAAGGCCAACTGGGCTTTGAAATGGATCGCCGA 14129 Query 44110 AAATGATTCTTT---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT 44166 || ||| | || || ||| || | || || ||||| | | | ||||| |||||||| Sbjct 14128 TAAGGATGCCTTATATGCTGAAAGATTAGTTGCCTTTGCTGCTATTGAAGGTATTTTCTT 14069 Query 44167 TTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 | ||||| ||||| | || || |||||||||||| |||| || ||||| || || || Sbjct 14068 TAGTGGATCCTTTGCTTCGATTTTCTGGTTAAAGAAAAGAGGATTAATGCCAGGATTAAC 14009 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || || ||||| ||||| | |||||||| |||||| ||||||||||| |||| Sbjct 14008 TTTCTCTAATGAATTAATTTCAAGAGATGAAGGATTACATACTGATTTTGCTTGTATGTT 13949 Query 44287 ACTTGGATATCTAGGAGACGATAAGCCT--TCATGTAAGACAATTACAGATATTGTTGTA 44344 | ||| || || ||| ||| ||| || | || | | ||| ||| |||| Sbjct 13948 ATTTGCCCATTTA-AAGA--ATAGACCTGATCCAG-AAATCGTGCAAAGA-ATTATTGTT 13894 Query 44345 GAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGA 44404 || || || || ||| | |||| | | || || ||||| || | ||| |||| Sbjct 13893 GAAGCTGTTGCTATTGAAAAGGAATATTTCACTGATGCTTTACCAGTTAGTTTGTTAGGT 13834 Query 44405 ATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA 44464 ||||| || ||| |||||| |||| | | || ||| | ||| | | | Sbjct 13833 ATGAACTCGGGATTAATGTGTCAATATGTTGAGTTTGTAGCTGATAGATTATTGGTTGCT 13774 Query 44465 CTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 | ||| | || |||| |||| || || |||||||| ||||| |||||||| Sbjct 13773 TTTGGTAATAAGAAGGTATATAATGTAACTAATCCATTTGATTTCATGGAGAATATTTCC 13714 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || | || || || || || |||||||| | ||| || ||||| Sbjct 13713 TTAGCTGGGAAGACTAATTTCTTTGAAAAGAGAGTTTCCGATTATCA 13667 >seq2047 Length=190326 Score = 140 bits (154), Expect = 3e-28 Identities = 286/420 (68%), Gaps = 25/420 (6%) Strand=Plus/Minus Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA-- 19419 ||| || || ||| ||| ||||| || ||||| | || | |||| | |||| Sbjct 114892 TGGTCCTCCAGGTACTGGTAAAACTTTGATTGCTCGTAAATTATCTAAAATGCTTAACGG 114833 Query 19420 -AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 ||| |||| |||||||| |||||||||||||| |||| ||||||||| ||| || Sbjct 114832 GAAAGAACCA---AAAATTGTTAATGGTCCTGAAATGTTAAGTAAATATGTTGGTGCTTC 114776 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 ||||||||| | || ||| ||| || || |||| ||| | |||| |||||| Sbjct 114775 AGAAGAAAATATTCGTAATTTATTTAAAGATGCCGAAGCTGAATATAAACAAA-AGGGCG 114717 Query 19539 CAAAAGTTC---TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595 | ||| ||| || |||| ||| | |||||||| || | | | || ||||| Sbjct 114716 AGGA--TTCAGATTTACATGTTATTATATTTGATGAATTAGATTCTGTTTTCAAACAAAG 114659 Query 19596 AGGTTCTG---GTGTAAATGGAGTACA--------TGACACTGTTGTCAATCAACTCCTG 19644 |||||| | | | |||| |||| ||| | |||||| |||||| | || Sbjct 114658 AGGTTCAGCCAGATCAGATGG--TACAGGTGTTGGTGATAATGTTGTTAATCAATTATTG 114601 Query 19645 TCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 || ||| | || ||||| | || | |||||||| || || ||||| |||||||||||| Sbjct 114600 TCGAAAATGGATGGTGTGGATCAGTTAAATAATATCTTGGTCATTGGTATGACTAATAGA 114541 Query 19705 CTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 | || ||||| || | || || ||| |||| ||| | || ||||| | || |||||| Sbjct 114540 TTAGATTTAATTGATACGGCATTGTTAAGACCAGGTAGATTTGAAATTCAAATTGAAATT 114481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444471291900