Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03]
2,380 sequences; 14,809,507 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1836 132 5e-26
seq481 118 1e-21
seq221 107 2e-18
seq333 89.7 6e-13
>seq1836
Length=79629
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | || || ||||||||||| | || ||||| || |
Sbjct 57117 ATGCAAATCTTCGTTAAGACTTTAACTGGTAAGACTATTACCTTAGAAGTTGAATCTTCT 57058
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | || |||| || || |||||||| || ||||| || |||||
Sbjct 57057 GACACCATTGACAATGTTAAATCTAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 56998
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | |||||||||||||||||||| | || || | | | || || | || || |||
Sbjct 56997 CAAAGATTAATTTTTGCTGGTAAGCAATTAGAAGACGGTAGAACTTTATCTGATTACAAT 56938
Query 27586 GTCCAAAAGGAATCCACT 27603
||||||||||||| |||
Sbjct 56937 ATCCAAAAGGAATCTACT 56920
Score = 123 bits (136), Expect = 3e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | || || ||||||||||| | || ||||| || |
Sbjct 57345 ATGCAAATCTTCGTTAAGACTTTAACTGGTAAGACTATTACCTTAGAAGTTGAATCTTCT 57286
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | ||||| || |||||||| || ||||| ||||||||
Sbjct 57285 GACACTATTGACAACGTCAAGTCCAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAA 57226
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | |||||||| |||||||| | || || | | | || || | ||||| ||
Sbjct 57225 CAAAGATTGATTTTTGCCGGTAAGCAGTTAGAAGACGGTAGAACTTTATCTGACTACAAC 57166
Query 27586 GTCCAAAAGGAATCCACT 27603
|||||||||||||||||
Sbjct 57165 ATCCAAAAGGAATCCACT 57148
>seq481
Length=384
Score = 118 bits (130), Expect = 1e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | || || ||||||||||| | || ||||| || |
Sbjct 208 ATGCAAATCTTCGTTAAGACTTTAACTGGTAAGACTATTACCTTAGAAGTTGAATCTTCT 149
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | ||||| || |||||||| || ||||| || |||||
Sbjct 148 GACACTATTGACAACGTCAAGTCCAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAA 89
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | |||||||| |||||||| | || || | | | || || | ||||| ||
Sbjct 88 CAAAGATTGATTTTTGCCGGTAAGCAGTTAGAAGACGGTAGAACTTTATCTGACTACAAC 29
Query 27586 GTCCAAAAGGAATCCACT 27603
|||||||||||||||||
Sbjct 28 ATCCAAAAGGAATCCACT 11
Score = 82.4 bits (90), Expect = 9e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| | ||||| || |||||||| || ||||| || ||||| || | | ||||||||
Sbjct 358 AAGTCCAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGATTGATTTTTGCC 299
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|||||||| | || || | | | || || | ||||| || |||||||||||||||||
Sbjct 298 GGTAAGCAGTTAGAAGACGGTAGAACTTTATCTGACTACAACATCCAAAAGGAATCCACT 239
>seq221
Length=38424
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| | || || ||||| |||||| | || || || ||
Sbjct 37881 AATGCAAATTTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTGGAAGTCGAATCCTC 37822
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| | || | || ||||| || ||||| || ||||| || || ||
Sbjct 37821 CGACACCATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCACCTGATCA 37762
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| | |||| ||||||||||| ||| | || |||| | | ||| || || || ||
Sbjct 37761 ACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACCTTAAGTGATTACAA 37702
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| ||||||| ||||| ||| | ||| | || |||
Sbjct 37701 TATCCAAAAAGAATCTACTTTACATTTGGTTTTG 37668
>seq333
Length=169781
Score = 89.7 bits (98), Expect = 6e-13
Identities = 272/416 (65%), Gaps = 11/416 (3%)
Strand=Plus/Plus
Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGC----GATC--GACCCCTTGCGACGGCCA 81381
|| ||||||||||| || || | ||| | ||| | || | | |||| | |||
Sbjct 50759 ATATCCGCATGCCAAGGTTCTAAATAAAGGGCAAAAGCTCCTGGTCTCTTGTTA---CCA 50815
Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441
|| || | || ||||| || || ||| || || | | ||| ||||| ||||| |
Sbjct 50816 CCTTGATCAACATAACGAGCCGTGTTGTTGAAAACTCTAACCATGGGGATAATACCGTTG 50875
Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGAT-TGAAAG 81500
|| ||| || ||||| | ||| || || |||| || | || || || ||
Sbjct 50876 GAAGTACCATTGGTACCAGCAATATAAGAACCAGTGGCCCGGATATTATGAATATGTAA- 50934
Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560
|| || ||||| | | ||| ||||| ||||||| || | || || ||||| ||
Sbjct 50935 CCCAATACCACCAGCACTCTTGGAAATTAAAGCACACGTCTTTAACGTGTCGTAAATACC 50994
Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620
|| ||| ||||| ||||| ||| ||||||||| ||||| || || ||| |
Sbjct 50995 ATCAATGGAATCTTCCTTCATAGCAACCAAGAAACACGAAGACATTTGTGGACTTGGAGT 51054
Query 81621 GCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATA 81680
|| |||||||| | || |||| | | || | || || | ||||| | | |||
Sbjct 51055 ACCAGCATTGAATAACGTGGGGGACCCATGGGTAAAGTATTTTTGAGACATTAAATTATA 51114
Query 81681 GGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736
| ||| | || || |||||||| ||||| |||||||| ||||| || | |||||
Sbjct 51115 TGATTCAATTACTCGGGGAATATCTTCACCATGAATACCAATAGCAACTCTCATAA 51170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570293433265600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |