Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2332 197 1e-45 >seq2332 Length=8947 Score = 197 bits (218), Expect = 1e-45 Identities = 618/954 (65%), Gaps = 52/954 (5%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| |||||| ||| | ||||| || ||||||||||| || |||| || ||||||| Sbjct 1315 TTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTTT 1256 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCC----GTA 16027 ||||||||||||| ||||| |||| || |||| | | | | || | | Sbjct 1255 CCATAAAATCAAATGGATTT-----TGAACATTA--TAGACTTTCTTATTACCAAATGCA 1203 Query 16028 ACTAAT---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCT 16084 |||||| ||||| || |||||||| | |||||||||||| || | | || || ||| Sbjct 1202 ACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTGTTCATACCT 1143 Query 16085 ATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTA 16144 | | | || || | || | || ||| ||| | ||| || |||| ||||| | Sbjct 1142 AATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGCTTCAACA 1083 Query 16145 ATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 || || | | | | | | ||| ||| |||| || ||| | || ||| Sbjct 1082 ATAATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAATGAGCAAATAATAAACAA 1023 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || || ||||| ||||| ||||| | || | ||| || ||||||||||| ||| Sbjct 1022 GCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGTTAAACCT 963 Query 16265 GGCATTTTT------------------------CCTCGTTTCTTTAACCAGAATATCGCA 16300 ||||| |||| ||||||||||||||| || | Sbjct 962 GGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAAAATAGAT 903 Query 16301 GCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 |||||||| || |||||| ||||| ||||| | ||||| || | ||||| ||| || Sbjct 902 GCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCTTTCAGCA 843 Query 16361 TACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420 || | || ||| | ||||||| | | |||| || |||||| | | ||||| Sbjct 842 TATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGCTTTTCTTCTAATACAT 783 Query 16421 TCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTA 16480 || ||| || || ||||| || | || ||||| ||| | ||||| ||| Sbjct 782 GGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCCTTAATATAAGTA 723 Query 16481 TCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 ||||| | ||| | || ||||||| || || || || || || || || |||| Sbjct 722 TCAATTA--AAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTGGAAACCAT 665 Query 16539 AGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCAT 16598 | || || ||| || | ||||| ||||| | |||| ||| | || |||| Sbjct 664 AAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCAT 605 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT 16658 | || ||||| ||| ||||||||| || || |||| | |||||| ||| |||| | Sbjct 604 TAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGTATCTTTCAT 545 Query 16659 CA-GATGTAA-GAATAT-GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 || || ||| || | |||||| | ||||||||| || ||| | |||||| | | Sbjct 544 CATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTCTTCAGCAG 485 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAA 16775 ||||||| || |||| || || || | || |||||| |||| ||| || |||| Sbjct 484 TCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAA 425 Query 16776 ATACGACGTATCTATCTAAGGA--TTCCTTTAACACGGGTTCATC---TTCCAT 16824 | | || ||||| |||| |||||| || | |||||||| |||||| Sbjct 424 ACATAACAAATCTA--CGAGGATTTTCCTTCAAGAGTGGTTCATCCTTTTCCAT 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511398226519600