Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2179 93.3 3e-14 >seq2179 Length=11267 Score = 93.3 bits (102), Expect = 3e-14 Identities = 279/430 (65%), Gaps = 3/430 (1%) Strand=Plus/Minus Query 101867 ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926 ||||| ||||| | ||||||||||| || || | |||| || | || || | Sbjct 6919 ACATAGAATTGGCAGAATACATGACATGGTGGAAGAGCCATCTTTGCAAAATCAGGCGGG 6860 Query 101927 TTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAAC 101986 ||||||||| |||| | || |||||||| ||||||||| || | | | |||| Sbjct 6859 TTCCAAGCAGACATAATAATTCTTCTATCGTAAGGGTTTGTCTTCAATTTTTTTATCACG 6800 Query 101987 TGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCT 102046 | | ||||| ||| ||||| || ||||||| || | | ||||| || || Sbjct 6799 TCGTGCAATTGATCATATCCTTGACCGGTATAATCAGTATCACAATCCTTATACTCAGCC 6740 Query 102047 CCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAA 102106 || ||||| ||||| || |||||||| || || || | ||| ||||| | ||| Sbjct 6739 CCAAAATGTCTCCATTGGAATCCATAAACTGGACCTAAATCACCTTCTCGACGATCAGTT 6680 Query 102107 AAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCT 102166 || || | || || ||| || | ||| ||||| | |||||||| | || || | Sbjct 6679 AATCCCAAATTGTCCAAATATTCACGAGAACCATTACCCTCCCAAATCTTGACACCTTTT 6620 Query 102167 GCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACA 102226 | || | |||| ||||| || || | |||||| | || || | || | | Sbjct 6619 TCACTTAACAATTTGGCATCAGTCGAACCAGCAACAAACCATAGGAGCTCATGAATGATA 6560 Query 102227 CCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA---TTCATTTTCTAAACTAAAC 102283 || | | || |||||||| || ||||| || ||||| ||||| ||| |||| Sbjct 6559 CCCTTTGAGAAAACTCTCTTTGTTGTTAAGAGCGGAAAAGTGTCATTGGACAAATCAAAC 6500 Query 102284 CTAGACTGTG 102293 || |||||| Sbjct 6499 CTTAACTGTG 6490 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 101676 TTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACT 101735 ||| ||| |||||||| ||||||| || | || || || |||| |||||| || || | Sbjct 7166 TTTCAAG-GCATCAATATGATCTAAGTAAACATGCGCGTCACCTAAAGTATGAATGAATT 7108 Query 101736 CTCCAGGCACTAGAT-TAGT-GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGC 101793 ||||| || | || | | || || |||||||| || || | | ||| ||| Sbjct 7107 CTCCA--CAGTCCATGTCGACGATGTGGGCAATCATCTTGGTCAACAATGCATAAGAAGC 7050 Query 101794 AATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAG 101853 |||||| ||||| || || |||||||| ||| ||||||||||||| | |||||| || Sbjct 7049 AATGTTGAATGGAACACCCAACCCCATGTCACAAGATCTTTGATACAATAAACAGGATAG 6990 Query 101854 CTT 101856 ||| Sbjct 6989 CTT 6987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361240061045030