Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2193 141 1e-28 seq2179 129 9e-25 >seq2193 Length=52601 Score = 141 bits (156), Expect = 1e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | ||||| |||| || || || || || |||| ||||| | Sbjct 24595 ACAATGCAAATCTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCT 24654 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || ||| ||| | || ||||| |||||||| |||||||| || || ||| Sbjct 24655 TCTGACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGAT 24714 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | | |||||||| || || ||||| || || || |||| ||| || || Sbjct 24715 CAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGACTAC 24774 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || |||||||| ||||| ||||| ||||| |||||| | || |||||||||| ||| | Sbjct 24775 AACATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGGTATGCAAATT 24834 Query 124776 T 124776 | Sbjct 24835 T 24835 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || || || || ||| |||| ||||| | | Sbjct 24826 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCT 24885 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | ||| ||||||||||| || |||||||| || || |||||| Sbjct 24886 GACACAATCGATAACGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 24945 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || || |||||||| || || |||| || || || || Sbjct 24946 CAACGTTTGATTTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTGTCTGACTACAAC 25005 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| ||||| ||||| ||||| |||||| | || |||||||||| ||| || Sbjct 25006 ATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGGTATGCAAATTT 25063 >seq2179 Length=11267 Score = 129 bits (142), Expect = 9e-25 Identities = 240/347 (69%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 205559 TTACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATA 205617 |||||| ||||| || || | |||||| ||||| | | |||| ||| ||| ||| Sbjct 6921 TTACATAGAATTGG-CAGAATACATGACATGGTGGAAGAGCCATCTTTGCAAAATCAGGC 6863 Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatA 205677 || ||||| || | | || || ||||| | ||| || | || | ||| ||||| Sbjct 6862 GGGTTCCAAGCAGACATAATAATTCTTCTATCGTAAGGGTTTGTCTTCAATTTTTTTATC 6803 Query 205678 ATAT-GTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTT 205736 | | ||| ||||||||| |||||||| ||||||| ||||| ||| |||| | Sbjct 6802 ACGTCGTGC-AATTGATCATATCCTTGACCGGTATAATCAGTATCACAATCCTTATACTC 6744 Query 205737 AGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATC 205796 ||| |||||||| | |||||| || ||||||||||||||||||||||||||| | ||| Sbjct 6743 AGCCCCAAAATGTCTCCATTGGAATCCATAAACTGGACCTAAATCACCTTCTCGACGATC 6684 Query 205797 ATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcc 205856 | | || || || | | ||||| || ||||| | |||||||| | || || Sbjct 6683 AGTTAATCCCAAATTGTCCAAATATTCACGAGAACCATTACCCTCCCAAATCTTGACACC 6624 Query 205857 tttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATA 205903 ||| | ||| | || | || ||| || |||| | |||||||| Sbjct 6623 TTTTTCACTTAACAATTTGGCATCAGTCGAACCAGCAACAAACCATA 6577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755432108704000