Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2193 98.7 1e-15 >seq2193 Length=52601 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | || || ||||| || ||| ||||||||||| ||||| |||| | Sbjct 25052 CCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 24993 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| | |||| |||| |||||||||||||| || | || || || || | || Sbjct 24992 AAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 24933 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||| | || | || | | | ||||| ||||| || Sbjct 24932 ATACCTTCCTTGT-CTTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTCAAC 24874 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || |||| ||||| || || |||||||| Sbjct 24873 TTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || |||||||| | ||| || ||||| || || |||||||| || |||||| Sbjct 25286 TATTGACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAA 25227 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | | ||| | |||| || | |||||||||||||| || | || || || || Sbjct 25226 TCGGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCT 25167 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | | |||||||| |||||| |||| | | | ||||| ||| Sbjct 25166 GGAGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGAT 25107 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | || ||||| || || |||| ||||| || || |||||||| Sbjct 25106 TCAACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571799516268400