Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2332 322 4e-83 >seq2332 Length=8947 Score = 322 bits (356), Expect = 4e-83 Identities = 623/912 (68%), Gaps = 51/912 (6%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| ||| ||||||||||||||| || || ||||| || |||||||||||||| Sbjct 1316 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 1257 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATCGCATCCCAATTCCAAC- 16060 |||||||||||||| ||| ||||||||| |||| ||| | | |||| | |||| Sbjct 1256 TCCATAAAATCAAATGGA--TTTTGAACATTATAGACTTTCT-TATTACCAAATGCAACT 1200 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 ||||||||||| || |||||||| | ||| || ||| || | || |||||| |||| | Sbjct 1199 AATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTGTTCATACCTAAT 1140 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || |||| || | ||| || || ||| | | ||||| |||| ||| ||||||| || Sbjct 1139 AAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGCTTCAACAATA 1080 Query 16181 ATATCTCTTACTACACTATTTAACGGA--GGGTTTA----ATAAGTGTTTAAACATTATA 16234 || | || | ||| |||| ||| ||| || ||| || ||| | || | Sbjct 1079 ATCT---TTTCGACA--ATTT-CTGGATCTGGTCTATTATTTAAATGAGCAAATAATAAA 1026 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||||||| ||| || ||||| || |||| ||||| || |||||||| || | | Sbjct 1025 CAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGTTAAA 966 Query 16295 CCTGGCATT------------------------AGTCCTCGTTTTTTAATCCAAAATATA 16330 |||||||| | |||| ||| || | ||| || ||| Sbjct 965 CCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAAAATA 906 Query 16331 GCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 | |||||||| ||| |||||| ||||||||||| || ||||| ||||| |||| ||| Sbjct 905 GATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCTTTCA 846 Query 16391 CC--GTACGTTCT-AtttttactttctatccattttttagcccaatttgctttttgtttA 16447 | || | || | | | | | |||||| || ||||||| |||||| | || Sbjct 845 GCATATAAGACCTCAGTATCAGT---AATCCATCTTAATGCCCAATCAGCTTTTCTTCTA 789 Query 16448 ACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATA 16507 | ||| || | || || ||||||||||| |||| ||| || ||| |||| Sbjct 788 ATACATGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCCTTAATA 729 Query 16508 TAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAA 16567 |||||||| |||| | ||| |||||||||||||||| || || || || ||| Sbjct 728 TAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTGGAAA 669 Query 16568 CCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTT 16627 |||||||| || ||||||| | ||||| ||||| | |||| |||| ||| ||| Sbjct 668 CCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTT 609 Query 16628 TCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttt 16687 || ||||| || ||||| || ||||| || || | || | ||| || | | || Sbjct 608 TCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGTATCTT 549 Query 16688 tCGTTATC-TGAAAGT--TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744 || | ||| | || | | | ||| ||| |||||||| |||||| | ||||| Sbjct 548 TCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTCTTCA 489 Query 16745 ACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATA 16804 |||||||||| || || | || || || || | || ||| || || | || ||| Sbjct 488 GCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATT 429 Query 16805 GGAAACACAACA 16816 ||||||| |||| Sbjct 428 GGAAACATAACA 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462497373058000