Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2332 338 6e-88 >seq2332 Length=8947 Score = 338 bits (374), Expect = 6e-88 Identities = 653/958 (68%), Gaps = 43/958 (4%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 |||| ||||| || |||||||| ||| |||||| |||||||| |||||||||||| Sbjct 1334 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTA 1275 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATC 14013 || | | ||| ||||||||||||||||||||||||||| | ||| || | ||||| | Sbjct 1274 CCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTT-TGAACATTATAGACTTTCTT 1216 Query 14014 ACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC 14073 | ||| | | | | || ||||||||| |||| || |||| ||||||| |||| || | Sbjct 1215 ATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTT 1156 Query 14074 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 14133 || |||||||||| || | || || | | || || ||| |||| ||||| ||| Sbjct 1155 ACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATC 1096 Query 14134 CACAGCCTCGTTTATAATAATCGT---AATAATTTCATTAGAAGGAGGATATTTTAGATG 14190 || || || | ||||||| | | |||||| | || || |||| ||| Sbjct 1095 AACTGCTTC---AACAATAATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAATG 1039 Query 14191 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 14250 ||| | |||||| ||||||||| ||| | || |||||||||| ||| | ||| || Sbjct 1038 AGCAAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATT 979 Query 14251 TGAAAATGTTAATCCTG------------------------GCATCAATCCTCGtttttt 14286 |||||| ||||| |||| ||||||| |||| ||| || Sbjct 978 TGAAAAAGTTAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTT 919 Query 14287 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 |||||| || || | || |||||||| |||||| || || ||||| |||||||| || Sbjct 918 TAACCAGAAAATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGC 859 Query 14347 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGA 14406 | ||||| ||| || | | | | | | | |||||| || ||||| |||| Sbjct 858 AACTAATCTTTCAGCATATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGC 799 Query 14407 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC--CTTCTCTTTA 14464 |||| || ||||| | || |||||||||||||||||| | || |||| |||| Sbjct 798 TTTTCTTCTAATACATGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTC-CTTTG 740 Query 14465 G-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14523 | | ||| ||| || |||||||| | | | ||| |||| || || || ||||| || Sbjct 739 GATCCTT--AATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAAT 682 Query 14524 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCT 14583 || || ||||||||||| || ||||||| | ||| || |||| |||| | Sbjct 681 CATAATTTGGAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATT 622 Query 14584 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14643 ||| |||||||||||||| ||||||||| || ||||| ||||| |||| Sbjct 621 TTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGA 562 Query 14644 AATAAAGTATTGCTCTTCATTGCTGAGTTT---TTTCCAATCGGCTAAATCCTTAGAAAG 14700 ||| |||||| || |||| | | ||| | ||||||| |||||| ||| | Sbjct 561 AATGAAGTATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAA 502 Query 14701 ATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTC 14760 ||| | ||| ||| | |||||||| || | ||||| || || | | ||| ||||| Sbjct 501 ATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTC 442 Query 14761 TTTATATAATATAGGAAAAACTACAAATCT-TGAAGATGTTTCTTTAAGAATTGGTTC 14817 | |||| || ||||| | |||||||| || ||| || ||| ||| | |||||| Sbjct 441 ATGATATCTAATTGGAAACATAACAAATCTACGAGGATTTTCCTTCAAG-AGTGGTTC 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482330345820400