Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2332 172 5e-38
seq918 125 6e-24
seq2193 111 1e-19
seq2023 86.0 6e-12
>seq2332
Length=8947
Score = 172 bits (190), Expect = 5e-38
Identities = 252/356 (71%), Gaps = 3/356 (1%)
Strand=Plus/Plus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
||||||||||| ||| | || ||||| ||||||||||| |||||||| ||| |||||
Sbjct 382 GATGAACCACTCTTGAAGGAAAATCCTCGTAGATTTGTTATGTTTCCAATTAGATATCAT 441
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626
|| |||||| | | ||||| || ||||||||||| |||||||| | |||||| | ||
Sbjct 442 GAAATTTGGCAATTTTACAAGAAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGAT 501
Query 57627 CTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683
| ||| ||| | |||||| ||| | || || ||| ||| | || |||
Sbjct 502 TTAAGTAAAGATTTACATGATTGGAGAGATAAATTAAATGATGATGAAAGATACTTCATT 561
Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743
| || || || || || || ||||| |||||||||||||| || ||||| | |||
Sbjct 562 TCTCGAGTATTAGCATTCTTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAA 621
Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803
| |||||| |||||| ||| | | || || | || ||||| || || ||| |
Sbjct 622 AATTTTTCAGCAGAAGTTCAAATTCCTGAAGCTAAATCATTTTATGGTTTCCAAATTATG 681
Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|||||||| | |||||||||| ||||| || | || ||||| || | |||||
Sbjct 682 ATTGAAAATATTCATTCAGAAACTTATTCCCTTTTAATTGATACTTATATTAAGGA 737
>seq918
Length=18345
Score = 125 bits (138), Expect = 6e-24
Identities = 409/631 (65%), Gaps = 6/631 (1%)
Strand=Plus/Plus
Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411
||||||| | ||| || ||||||| || ||| | || | ||| | | || ||||
Sbjct 10093 TCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTT 10152
Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471
| || || ||| | | ||| | ||| || || | || | |||||| || || | |
Sbjct 10153 TACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAAT 10212
Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531
||| |||||| || || ||||||||||| || || ||||| || |||||||| ||||| |
Sbjct 10213 AAAGGGCAAATGCTCCTGGTCTCTTATTACCACCTTGATCAACATAACGGGCGGTGTTAT 10272
Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG 23591
|| | || | || ||| || | | ||||||||| | ||| || || | | |
Sbjct 10273 TGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCGTTGGTACCGGCAATATATG 10332
Query 23592 AACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCC-GCCCGATTTCGATATC 23650
|| | | |||| || |||| || ||||| || || || || | ||| || |||
Sbjct 10333 CCCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTT-GAAATC 10391
Query 23651 ATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACC 23710
| || || ||||| ||| || ||||| || || || || ||||| | || ||
Sbjct 10392 AAAGCACAAGTTTTCAAAGTATCATAGATCCCATCAATTGAATCATCTTTCATAGCAACT 10451
Query 23711 AAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCG 23770
|||||||| ||||||||||| | | || ||| |||| || | || || |
Sbjct 10452 AAGAAACATGAAGACATTTGTGGACTTGGAGTACCGGCATTAAATAAAGTTGGTGAACCA 10511
Query 23771 TGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCT 23830
|| || || | | ||||| | ||| || | || || | | || || |
Sbjct 10512 TGAGTGAAAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAGGGATATCATTA 10571
Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC--GACCGTGACGC 23888
|| || ||||| ||||| || | ||| || | | ||| ||||| || | | | | |
Sbjct 10572 CCATGAATACCAATGGCCACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTA--C 10629
Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948
| |||| | | || | ||| || | || || || || || || ||||| | |||||| |
Sbjct 10630 CATTAACTCTTAATAAATAAGATCTTTCCAAAGTCTTGAACCCGAAATAATTATAGTTGA 10689
Query 23949 AGTCACGATCGTGCACTATGGCCGAATTCAA 23979
| |||||||| | || || || ||||| ||
Sbjct 10690 AATCACGATCATAAACAATTGCTGAATTTAA 10720
>seq2193
Length=52601
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| | || || || || ||||| | || |||||| | ||
Sbjct 24826 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCT 24885
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || ||| | ||| ||||||||||| | || || || ||
Sbjct 24886 GACACAATCGATAACGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 24945
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || |||||||| || || || |||||| || ||| || || || |||
Sbjct 24946 CAACGTTTGATTTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTGTCTGACTACAAC 25005
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| ||||| ||| | ||| | || | ||| |||| || ||||
Sbjct 25006 ATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGGTA 25054
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| | || || || || || ||| | || |||||| | ||
Sbjct 25054 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 25113
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| | ||| ||||||||||| | || || || ||
Sbjct 25114 GACACTATTGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCTCCAGATCAA 25173
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || |||||||| || || ||||||||| || ||| | |||||| |||
Sbjct 25174 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGATTACAAC 25233
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| ||||| ||||| ||| | ||| | || | ||| | || || |||
Sbjct 25234 ATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGGT 25281
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||| | || || || || || ||| | || |||||| | ||
Sbjct 24598 ATGCAAATCTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 24657
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| | ||| || |||||||| | || || || ||
Sbjct 24658 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 24717
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || || ||||| || || ||||||||| || ||| | ||| || |||
Sbjct 24718 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGACTACAAC 24777
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| ||||| ||| | ||| | || | ||| |||| || ||||
Sbjct 24778 ATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGGTA 24826
>seq2023
Length=11923
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||| |||||||||||||| ||||| | || || || || || ||| | || ||||||
Sbjct 3909 CAAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAAT 3968
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| || |||| | | || | |||||| | || ||||||||||| | || || |
Sbjct 3969 CTTCTGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCTG 4028
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||| || | |||| || ||||| || || || ||||| || ||| | || |
Sbjct 4029 ACCAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACT 4088
Query 31368 ATAACATTCAAAAAGAATCGAC 31389
| ||||| ||||| ||||| ||
Sbjct 4089 ACAACATCCAAAAGGAATCTAC 4110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445752302637600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |