Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2332 172 5e-38 seq918 125 6e-24 seq2193 111 1e-19 seq2023 86.0 6e-12 >seq2332 Length=8947 Score = 172 bits (190), Expect = 5e-38 Identities = 252/356 (71%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||| ||| | || ||||| ||||||||||| |||||||| ||| ||||| Sbjct 382 GATGAACCACTCTTGAAGGAAAATCCTCGTAGATTTGTTATGTTTCCAATTAGATATCAT 441 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | | ||||| || ||||||||||| |||||||| | |||||| | || Sbjct 442 GAAATTTGGCAATTTTACAAGAAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGAT 501 Query 57627 CTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683 | ||| ||| | |||||| ||| | || || ||| ||| | || ||| Sbjct 502 TTAAGTAAAGATTTACATGATTGGAGAGATAAATTAAATGATGATGAAAGATACTTCATT 561 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 | || || || || || || ||||| |||||||||||||| || ||||| | ||| Sbjct 562 TCTCGAGTATTAGCATTCTTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAA 621 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | |||||| |||||| ||| | | || || | || ||||| || || ||| | Sbjct 622 AATTTTTCAGCAGAAGTTCAAATTCCTGAAGCTAAATCATTTTATGGTTTCCAAATTATG 681 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 |||||||| | |||||||||| ||||| || | || ||||| || | ||||| Sbjct 682 ATTGAAAATATTCATTCAGAAACTTATTCCCTTTTAATTGATACTTATATTAAGGA 737 >seq918 Length=18345 Score = 125 bits (138), Expect = 6e-24 Identities = 409/631 (65%), Gaps = 6/631 (1%) Strand=Plus/Plus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 ||||||| | ||| || ||||||| || ||| | || | ||| | | || |||| Sbjct 10093 TCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTT 10152 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || || ||| | | ||| | ||| || || | || | |||||| || || | | Sbjct 10153 TACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAAT 10212 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 ||| |||||| || || ||||||||||| || || ||||| || |||||||| ||||| | Sbjct 10213 AAAGGGCAAATGCTCCTGGTCTCTTATTACCACCTTGATCAACATAACGGGCGGTGTTAT 10272 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG 23591 || | || | || ||| || | | ||||||||| | ||| || || | | | Sbjct 10273 TGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCGTTGGTACCGGCAATATATG 10332 Query 23592 AACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCC-GCCCGATTTCGATATC 23650 || | | |||| || |||| || ||||| || || || || | ||| || ||| Sbjct 10333 CCCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTT-GAAATC 10391 Query 23651 ATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACC 23710 | || || ||||| ||| || ||||| || || || || ||||| | || || Sbjct 10392 AAAGCACAAGTTTTCAAAGTATCATAGATCCCATCAATTGAATCATCTTTCATAGCAACT 10451 Query 23711 AAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCG 23770 |||||||| ||||||||||| | | || ||| |||| || | || || | Sbjct 10452 AAGAAACATGAAGACATTTGTGGACTTGGAGTACCGGCATTAAATAAAGTTGGTGAACCA 10511 Query 23771 TGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCT 23830 || || || | | ||||| | ||| || | || || | | || || | Sbjct 10512 TGAGTGAAAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAGGGATATCATTA 10571 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC--GACCGTGACGC 23888 || || ||||| ||||| || | ||| || | | ||| ||||| || | | | | | Sbjct 10572 CCATGAATACCAATGGCCACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTA--C 10629 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 | |||| | | || | ||| || | || || || || || || ||||| | |||||| | Sbjct 10630 CATTAACTCTTAATAAATAAGATCTTTCCAAAGTCTTGAACCCGAAATAATTATAGTTGA 10689 Query 23949 AGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | |||||||| | || || || ||||| || Sbjct 10690 AATCACGATCATAAACAATTGCTGAATTTAA 10720 >seq2193 Length=52601 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || || || ||||| | || |||||| | || Sbjct 24826 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCT 24885 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| ||||||||||| | || || || || Sbjct 24886 GACACAATCGATAACGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 24945 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| || || || |||||| || ||| || || || ||| Sbjct 24946 CAACGTTTGATTTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTGTCTGACTACAAC 25005 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||| | ||| | || | ||| |||| || |||| Sbjct 25006 ATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGGTA 25054 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || || || || ||| | || |||||| | || Sbjct 25054 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 25113 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| ||||||||||| | || || || || Sbjct 25114 GACACTATTGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCTCCAGATCAA 25173 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| || || ||||||||| || ||| | |||||| ||| Sbjct 25174 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGATTACAAC 25233 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| ||||| ||| | ||| | || | ||| | || || ||| Sbjct 25234 ATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGGT 25281 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| | || || || || || ||| | || |||||| | || Sbjct 24598 ATGCAAATCTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 24657 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| || |||||||| | || || || || Sbjct 24658 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 24717 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| || || ||||||||| || ||| | ||| || ||| Sbjct 24718 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGACTACAAC 24777 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||| | ||| | || | ||| |||| || |||| Sbjct 24778 ATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGGTA 24826 >seq2023 Length=11923 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| |||||||||||||| ||||| | || || || || || ||| | || |||||| Sbjct 3909 CAAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAAT 3968 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | | || | |||||| | || ||||||||||| | || || | Sbjct 3969 CTTCTGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCTG 4028 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || | |||| || ||||| || || || ||||| || ||| | || | Sbjct 4029 ACCAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACT 4088 Query 31368 ATAACATTCAAAAAGAATCGAC 31389 | ||||| ||||| ||||| || Sbjct 4089 ACAACATCCAAAAGGAATCTAC 4110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752302637600