Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq918 488 7e-133 seq2332 336 3e-87 >seq918 Length=18345 Score = 488 bits (540), Expect = 7e-133 Identities = 1492/2275 (66%), Gaps = 56/2275 (2%) Strand=Plus/Plus Query 64835 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 64893 |||| || |||||||| | ||| || || | || || | || ||||||||| || || | Sbjct 8845 CAATAGTAAATTGAATAGCAGCAGAAGCAGCTTGAGTTCTTAAATAGTACATCCCGGTCT 8904 Query 64894 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 64953 | | || |||| ||||| ||||||||||| || | ||| | |||||| Sbjct 8905 TCAATCCCTTTTTCCAACCGTAGAAATGCATACTGGTCAATTTACCCATTGTTGGATCTT 8964 Query 64954 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 65013 ||||||||||| | ||||||| |||||| || || || | || || || ||||| | Sbjct 8965 TAATATGGATATTTAAAGATTGAGATTGATCAATAAATGCCGCTCTATCAGCTGCCATAT 9024 Query 65014 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 65073 ||||| ||||| | ||||||||| | || ||||| | ||||| || ||| Sbjct 9025 CAATGATATGTTTTTGAGAAATTTCCCATACTGTCTTATACAAGGCTTTAATCTCAGCTG 9084 Query 65074 GAAGGTTTG-TATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCAT 65130 | | ||| | || ||||| || ||| || || ||||| ||| | || | | | Sbjct 9085 GGATGTTAGGTAAGGATTGAATAGAACCATTATTTGAAATAATACTACTTTTAACTGCTT 9144 Query 65131 CATTCCATAATTTTCTC-TCGGTTAAAACTCT-AAGGAGATGCGGATTAACTACTTGAAA 65188 ||||||| ||| | || ||| |||| || ||| |||||||| | ||| || Sbjct 9145 CATTCCA-AATACCCAAATCAACCAAATCTCTTAATAAGAAT-GGATTAACAATTTGGAA 9202 Query 65189 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATT 65248 ||| |||| | ||||| | | ||||| || ||||| ||||| | | | ||||| Sbjct 9203 TTCACCAGCAAGAACTCTTCTTGAATAAATGTTTGAAGTATATGGTTCGAAACATTCATT 9262 Query 65249 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 65308 ||| || || ||||| | ||||| ||||| |||||||| || || || | | |||||| Sbjct 9263 ATTACCTAAGATTTGTGATGTTGAAGCAGTTGGCATAGGGGCAACTAAAAGAGAATTTCT 9322 Query 65309 AAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGG 65365 | || ||||| || || || | |||| |||| ||||||| ||| | || | || Sbjct 9323 TAATCC--ATGTTTTGCCATGTTTTGCTTTA-AGGTATCCCAATCCCATAATTCAGTTGG 9379 Query 65366 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGT 65425 | ||||| | ||| | | || || ||| ||| | Sbjct 9380 TTTTCTATTCCATAAATCATATTGTAATAAACCCTGAGATGCAGGTGAACCTGGATAAGA 9439 Query 65426 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 65485 || || || ||||| | | |||| |||| | | || | ||| | | |||||| Sbjct 9440 TTCATAAGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCCACGGCAGCATGATAAAT 9499 Query 65486 GGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT-TTA 65544 ||||| ||||| | |||||| ||| ||||| | ||||||||| |||| ||| Sbjct 9500 AGTTTCAAAGATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGG-TAATCTTA 9558 Query 65545 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604 | || || || || || || ||||| || || | | || ||||||| | || | | Sbjct 9559 ATGCCATGAATGCATCAGCCAAACCTTGTACCCCCAAGGCAATTGGTCTATTTTTCATGT 9618 Query 65605 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 65664 | || ||| |||||||||| |||||||| ||| ||| |||| |||||| | ||| | Sbjct 9619 TGGAAGTTTTGGCTTCTGGAACTGGATAATAGTTACGATCAATAACTTTATTTAAATTAC 9678 Query 65665 ---TGACAAT-----TACTTTGACCACATCCTTCAGTTTGAGAAAATCAA--ATCGCTCA 65714 | ||||| || ||| | || ||| | | | || || ||| ||| Sbjct 9679 GAGTAACAATCTTGGTAATTTCATGTAATTTATCAAAATTATACCATGAATGATCA-TCA 9737 Query 65715 TCTATTACAA-ACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 65771 ||| || ||| | ||| | || |||| || || | |||||||| || || || | | Sbjct 9738 TCTTTTTCAACAAATGATGGTAAGGCAATTGAAGCTAAGTTACAAACAGCAACTTCTTCA 9797 Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 | | ||||| | || ||| || | ||| | || || | |||||||| Sbjct 9798 GGTGATGAATATTCAACAATTTCACAACATAAATTGGATGATTTAATAATACCTAAATTC 9857 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 | |||||| |||||| |||||| ||||| ||||| | || |||||||||||||||||| Sbjct 9858 TTTTGATTGGTCTTTTGGTTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCA 9917 Query 65892 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC 65951 | || | ||| | || | | ||| | | | ||||| || | ||||| | | Sbjct 9918 GTTTGGGCTTCCAAGATGGAATACCATAATTTTTGTGCCTTAAT----GGTTTGTCTACC 9973 Query 65952 TT----TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 66007 ||| | ||| ||| | ||| ||| |||| || || || || |||||| Sbjct 9974 ACGACCTTCACGTTCATATTTTTCATATAATTGTTCAAATTCATCACCATAAACATCAGG 10033 Query 66008 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067 || |||||| ||||| || | | || | ||| || || | | | ||||| || Sbjct 10034 TAACCCAGGAGCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACTCTCTT 10093 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTT 66127 |||||| | |||||||||||| | ||| ||||||||||||| |||| ||| || || Sbjct 10094 CATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTT 10153 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 ||| ||| ||| ||| ||| | || | | |||||| ||||||| ||||| || || Sbjct 10154 ACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATA 10213 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 | ||| | |||| || | || || || || ||||| | || | ||||||||||| Sbjct 10214 AAGGGCAAATGCTCCTGGTCTCTTATTACCACCTTGATCAACATAACGGGCGGTGTTATT 10273 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 |||| | | ||| || |||||||| ||||| ||||| ||||| |||| ||||| Sbjct 10274 GAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCGTTGGTACCGGCAATATATGC 10333 Query 66308 TCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 ||| | | |||||||||| ||| || ||| || || || || | || || || || Sbjct 10334 CCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAA 10393 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 || || ||| || ||||||||||| || || || |||||| |||| || || Sbjct 10394 AGCACAAGTTTTCAAAGTATCATAGATCCCATCAATTGAATCATCTTTCATAGCAACTAA 10453 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 ||||| ||||||||| ||| ||| || ||||||||||| || || ||| | || Sbjct 10454 GAAACATGAAGACATTTGTGGACTTGGAGTACCGGCATTAAATAAAGTTGGTGAACCATG 10513 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT-GAGTCTATATCCCATT 66546 || || | |||| || | | ||| || | |||||| || ||| |||| |||| Sbjct 10514 AGTGAAAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAG-GGATAT--CATT 10570 Query 66547 --GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 66604 |||||| || | || || | ||| | | || || ||||||||| | | || Sbjct 10571 ACCATGAATACCAATGGCCACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTACC 10630 Query 66605 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAA 66662 || | | | || || || ||| |||||||||| || || || ||||| || || |||| Sbjct 10631 ATTAACTCTTAATAAATAAGATCTTTCCAAAGTCTTGAACCCGAAATAATTATAGTTGAA 10690 Query 66663 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC 66722 | || || || |||| ||| | || || | || ||| || || || | || | Sbjct 10691 A--TCACGATCATAAACAATTGCTGAATTTAATTCATCGGCATGTTCACAAATAATAT-C 10747 Query 66723 ATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAA 66781 || | ||| ||||| || ||||||||||| | | || || || ||||| | | Sbjct 10748 ATAAGTCTCCTTGGAAATCATAGGAGAATGTTTATCGGTCTTGGGGTTAACATAATCATA 10807 Query 66782 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGC 66841 ||| || | | |||| | | || |||| | |||| ||| |||| ||| |||||||| Sbjct 10808 TAATTCTTTACTAACTTGAGAATATTGTTTGGTAGTTTGTTTATGTAAATTGGATACGGC 10867 Query 66842 TATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTT 66900 |||||||| |||| |||||||||||| ||||| || || || || ||| || ||| Sbjct 10868 AATTCTAGCAGCTAAAATGGCATAATCTGGATGAATAGTGGT-CATGTAGGCAGCAGTTT 10926 Query 66901 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCT 66960 | || || | | || ||||| || || || || |||| ||| | |||| || | | Sbjct 10927 CAGCGGCTAAGTTATCTAATTCGACGGTGGTAACACCATGATAAACTCCT--GAAATGGT 10984 Query 66961 TCAT--AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT 67018 || | || || | | ||| | ||||| | | ||| || ||||||||| || Sbjct 10985 TCTTTGAGTGATGGCGACGGCATCAACATGATTCGGATCTAATCCGTAACATAATCTTTG 11044 Query 67019 AATACGAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTA 67073 || | || ||||||||||| || ||||| |||||| |||| || |||| Sbjct 11045 AACTCTAGCGGTGATTTTATCGAAACGGACATGTTCCTTACGGCCATCTCTTTTA 11099 >seq2332 Length=8947 Score = 336 bits (372), Expect = 3e-87 Identities = 650/954 (68%), Gaps = 36/954 (4%) Strand=Plus/Minus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 || || |||||| || ||||| || ||| || | ||||| ||||| |||||||| Sbjct 1335 TTTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTT 1276 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 ||| ||||||| ||||||||||| ||||| |||||||| ||||||||| | ||| || Sbjct 1275 ACCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTTTGAACATTATAGACTTTCTT 1216 Query 35968 AAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTC 36027 | || ||| || | |||||||| || |||||||| | |||| ||||| || Sbjct 1215 ATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTT 1156 Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 || ||||| |||| | ||||||| | || |||| | | |||| | ||||||| Sbjct 1155 ACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATC 1096 Query 36088 GACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 36147 || || || ||||| | || ||||| | ||| || |||||| Sbjct 1095 AACTGCTTCAACAATAATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAATGAGC 1036 Query 36148 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 ||| | ||||| || ||||| |||| ||| || ||||||| ||||||||| || || Sbjct 1035 AAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGA 976 Query 36208 AAACGTGAGTCCGGGCATTAG-----------------GC--CA---CGCTTTT--TAAG 36243 ||| || | || ||||| || || | ||||| | | Sbjct 975 AAAAGTTAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAA 916 Query 36244 CCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAAT 36303 ||| || || || |||||||||||| ||||||||| ||||| || || |||||||||| Sbjct 915 CCAGAAAATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAAC 856 Query 36304 AAGTCTCTCTCCATA----ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 36359 | ||| || |||| ||| || | ||| ||||| || |||||||| || | Sbjct 855 TAATCTTTCAGCATATAAGACCT-CAGTATCAGTAATCCATCTTAATGCCCAATCAGCTT 797 Query 36360 TCTTTTTTACACAAGGCAT-TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA 36418 | || | | ||| || || ||| || ||||||||||| | || | ||| || | Sbjct 796 TTCTTCTAATACATGGAATATGT-TCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGA 738 Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || |||| ||| |||||||| ||||| ||| |||| |||||||| |||||||| Sbjct 737 TCCTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATA 678 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 ||||| || || || || || |||| || | ||| || ||||||| |||| ||| Sbjct 677 ATTTGGAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCA 618 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598 |||||||||||| || || || ||| || ||||| || || ||||| | || Sbjct 617 ATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATG 558 Query 36599 AAATATTTTTCGTTTGGTGTTAGTTTAT---TCCAATCATTGATATCTTTAGATATATCC 36655 || ||| |||| | ||| ||||| ||||||||| | ||||||| || ||| Sbjct 557 AAGTATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCA 498 Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 | |||||| | |||||||||||||| ||||| || || || | | ||| || |||||| Sbjct 497 ATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGA 438 Query 36716 TATTGAATTGGAAAAATAACAAATCTATTTTGATTTT-TTGCAAGGATTGGTTC 36768 ||| ||||||||| |||||||||||| |||||| | ||| || |||||| Sbjct 437 TATCTAATTGGAAACATAACAAATCTACGAGGATTTTCCTTCAA-GAGTGGTTC 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658151985285200