Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2193 100 3e-16 >seq2193 Length=52601 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 |||||||| || | || || || ||||||||||| || || || || || |||| Sbjct 25037 AAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCT 24978 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | || |||||||| | |||| |||||| ||||| ||||| || ||||| ||||| Sbjct 24977 TCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTC- 24919 Query 139673 GTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| |||| | |||| | | || | |||||| | | || || || | || | || Sbjct 24918 TTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGATGGT 24859 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| || || || || || ||||| ||||||||| Sbjct 24858 CTTACCAGTTAAGGTCTTGACGAAAATTTGCATA 24825 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 |||||||| || | || || || ||||||||||| || ||| | || || |||| Sbjct 24809 AAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGATAAAGTTCTACCGTCT 24750 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | || ||||||||| | |||| |||||| ||||| ||||| || ||||| || || Sbjct 24749 TCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCT 24690 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 |||||| || | | || | ||||| | | || || || | ||| | ||| Sbjct 24689 TGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTC 24630 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGT 139773 || || || || || || ||||| |||||||| | | |||| Sbjct 24629 TTACCAGTTAAAGTCTTGACGAAGATTTGCATTGTTAATGT 24589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048311976000